RNA id: TU118397


Basic Information

Item Value
RNA id TU118397
length 3014
lncRNA type inter_gene
GC content 0.50
exon number 6
gene id G105123
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1912464 ~ 1917170 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctctcctcttcaagtTGCTTGAAATAACAAGGTCATGTCTCTACTTCCCTTCAGAAgtcctcttcctgtgtctttaCAGGATGTTGATAATAGCAGATGTTATGTAAGACAATAACTATACATTACGATAATAAAGAGCTTAAGGACAGAAAATGGCGGACAGAGATGAGACAGTTGATCAGAAAAACAGAATCGTCACCAGGAGTAAGCTGATGATAATTCCAAGTTGTTTTTATTATGTTATATGAAAAATAGACATGTAATATATAGGACAGAGTTATCTTTGCTCGTTCCTTCTTTCTCTGACCCGGTAGAATCCATTTGAGAACAAATATGCCCTTAGCTTTAACACAACTATTCATCTGTCATATTTTGGAACAgggttttttttaaagtttttttaaatacagGTTTTCAATTTACTCCATTAACAAGTAATTATAAATGTATTCACAACATGGCACTATATGGAAACAACAAGCCAAACTGACCACTCAGAAGTGACTGGCATAATCACTGTTACATGTATCTTTAGTTAGCTAGTGATGTTATTCTCATTGGTTTTGTTTTGTAGCTTTATCTCACACCCGATGACTTGTCTTCTATAGATGGACATGTTGGTTACCTCGGTTAcgggtcagtggaggctggtgtgtGGAGATGTAGTTAAGGACAGGCTCGTCGTCACGTGTTTTCACACCGCTCCGTTTTATCCCGTTCCAGCCGTTAACAACGTGAGCCCGTCCTCCGATATCTCCCGCTGCCACCAGCCTCCAGTGCTCCAGGTGAGGTGTCGTCGTTAGCTACAGGCGATCTCTTGTTTTGTCTGTTCTCACACCTGGTCTGTGTGTTGCGTCTAGTACAGGACGAGTTTGGATGATGTCATCTCtcacaggggtcaggggtcaggggtcagtttGAATGTGAAAGGTCAGTTCATCAGATCACACACTATGATACTTGGTTTTTTTCACAAACATGAAAATCGAAGCCGATATATTCATTTGAAGAGAAATTGATCCAAAAGGTTAAAGAAAACTGCAACACAGAATCTTCAGCTCTATCAACTTGTTATGTCCCAGATCACCTGGGGCTTCTCCTACAAACAAAACGTAGCAGCTTTTAGTCTCCATTCTATCCCTGCTACGGGAATAACTAGAGCTCCGTTGTGTCTGAACCGACAGAACAGTCGTCTAGAGTAATGTGATGTATGTCCAGTGTCTGGTGCATCTGATGTCCTCAGCAGCCCAGTGTCTTTATCACCCTGCCTTGTTAGTCTATAGATTCTAGGTTGTGATTTATAACAACTGGCTATAGATTCTATGTTGTGATTTATAACAACTGGCTATAGATTCTATGTTGTGATTTATAACAACTGTCTATAGATTCTATGTTGTGATTTAAAACAACTGGCTATAGATTCTATGTTGTGATTTATAACAACTGTCTATAGATTCTATGTTGTGATTTATAACAACTGTCTATAGATTCTATGTTGTGATTTAAAACAACTGTCTATAGATTCTAGGTTGTGATTTATAACAACTGTCTATAGATTCTATGTTGTGATTTATAACAACTGTCTATAGATTCTATGTTGTGATTTACAACAACATGACACACGGTGTGAAGCCAAGTGAGGTAGTGACAGAGCAGATTTTAAATATAATATTTCTCCTTTAGAGACGTTTCAACTGTTTGATTAAACCTAAACCTATATATTCTACCTCATCTAGGAACTGAGGAGGATTCagtttgttgtttttattttgtacgcaaataaaacaacaacacaactacAGTAGCAATCCCCGTTGGTATTGCACCACTGTGGAGCACACATCCTCTGTGTTAAAGGCTTTTTCTCCCTCTGTTAGCGCTTCCTGTCCGCTGTTACAATGAGCTGTGTTACTTTGAACTGAGTAGGAAATGAACATCAAATCACAAGCTAGTTACACCACAGCTGTTGTTAGTTACACCACAGCTGCTGTTAGTTACACCACAGCTGCTACTAGTTACACCACAGCTGCTGTTAGTTACACCACAGCTGCTGTTAGTTATACCACAGCTGCTGTTAGTTACACCACAGCTGCTGTTAGTTACACCACAGCTGCTGTTAGTTACACCACAGCTGCTGTTAGTTACACCACAGCAATTATAGAACAACAGTCGGCAGCAATTGCTTAGGCTCAATATAGATATTTTTTAGGGAAAAAGGGGTACTCCATTCTTTCAATTCTTCATTGCTGAAGATGACACTCATAAATCCAGTCAAGGTGGAAAACCTACGCTAGACAGTGACTGACTGCCACTAATAAAGAGTTAAATCAAAGGAGCTGTGTGATTACCTCTAGCCGTTAGTGGAGACAAAagattaagaacaccttcctaatattgagttgcaagaCAGCCTCAAATCGTCTGGGCTCactgactccacaaggtgtcgaaagccttccacggggatgctggccccttgttaactccaatgcttcccacagttgtgtcaagttggctggatgtccttttgggtggtggaccattcttgatacagttgagcatgaaaaacccagcagcgttgcagttcttgacacattgaaactggtgcgcctggcacccactaccataccccgtttaaaggcacataaatcttttgtcttgcccattcaccctctgaatggcacacatacacaatccatgtctcaattgtctcaaggcttaaaaatccttctttaacctgtctcctccccttcatctacactgattgaagatgATTTAACAACTggcatcagtaagggatcatagctttcacctggattcacctggtcagtctatgtcatggaaagagcaggtgttcttaatgtcttATCCACTCAGGACATGTCCTCTATATTAGCGGTTGGCTACCTTTTTGTTTACTGTGCCCCAGAAGTACCCCCTCATTTGACCAGTAGGCCTACGTTCTGATGAGTCTCCCCAGAAGTACCCCCTCATTTGACCAGTAGGCCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118470 lncRNA upstream 5504 1906496 ~ 1906960 (+) True G105162
TU118467 lncRNA upstream 8574 1903431 ~ 1903890 (+) True G105159
TU118466 lncRNA upstream 9285 1902312 ~ 1903179 (+) True G105158
TU118464 lncRNA upstream 11008 1900698 ~ 1901456 (+) True LOC110511503
TU118458 lncRNA upstream 20516 1891466 ~ 1891948 (+) True G105152
TU118400 lncRNA downstream 333 1917349 ~ 1918041 (+) True G105124
TU118411 lncRNA downstream 1066 1918082 ~ 1922686 (+) False G105125
TU118412 lncRNA downstream 1066 1918082 ~ 1922686 (+) True G105125
TU118484 lncRNA downstream 23170 1940186 ~ 1940573 (+) True G105176
TU118485 lncRNA downstream 25046 1942062 ~ 1942281 (+) True G105177
XM_036935163.1 mRNA upstream 11016 1865365 ~ 1901448 (+) False LOC110511503
XM_036935200.1 mRNA downstream 199537 2116553 ~ 2120455 (+) True LOC110516539
XM_036961504.1 mRNA downstream 249105 2166121 ~ 2177996 (+) True LOC118944029
XM_036961507.1 mRNA downstream 501170 2418186 ~ 2420621 (+) True LOC118944030
XR_005034608.1 mRNA downstream 1061220 2978236 ~ 2978524 (+) True LOC118937340
XR_005034604.1 mRNA downstream 1061770 2978786 ~ 2980193 (+) False LOC118937337
TU118283 other upstream 201907 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 212033 1699073 ~ 1700431 (+) True G105036
TU118057 other upstream 559601 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 758715 1153061 ~ 1153749 (+) True G104761
TU116939 other upstream 1039949 860506 ~ 872515 (+) True cmc1
TU119728 other downstream 603700 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 800945 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 1057807 2974823 ~ 3039475 (+) True G106240
TU120034 other downstream 1289781 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 1450189 3367205 ~ 3425955 (+) False mboat1

Expression Profile