RNA id: TU118898


Basic Information

Item Value
RNA id TU118898
length 3650
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G105427
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1912592 ~ 1917188 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGGGAGACTCATCAGAACGTAGGCCTACTGGTCAAATGAGGGGGTATTCTGGGGAGACTCATCAGAACGTAGGCCTACTGGTCAAATGAGGGGGTACTTCTGGGGAGACTCATCAGAACGTAGGCCTACTGGTCAAATGAGGGGGTACTTCTGGGGAGACTCATCAGAACGTAGGCCTACTGGTCAAATGAGGGGGTACTTCTGGGGAGACTCATCAGAACGTAGGCCTACTGGTCAAATGAGGGGGTACTTCTGGGGCACAGTAAACAAAAAGGTAGCCAACCGCTAATATAGAGGACATGTCCTGAGTGGATaagacattaagaacacctgctctttccatgacatagactgaccaggtgaatccaggtgaaagctatgatcccttactgatgccAGTTGTTAAATcatcttcaatcagtgtagatgaaggggaggagacaggttaaagaaggatttttaagccttgagacaattgagacatggattgtgtatgtgtgccattcagagggtgaatgggcaagacaaaagatttatgtgcctttaaacggggtatggtagtgggtgccaggcgcaccagtttcaatgtgtcaagaactgcaacgctgctgggtttttcatgctcaactgtatcaagaatggtccaccacccaaaaggacatccagccaacttgacacaactgtgggaagcattggagttaacaaggggccagcatccccgtggaaggctttcgacaccttgtggagtcagtGAGCCCAGAggtgttcttaatctTTTGTCTCCACTAACGGCTAGAGGTAATCACACAGCTCCTTTGATTTAACTCTTTATTAGTGGCAGTCAGTCACTGTCTAGCGTAGGTTTTCCACCTTGACTGGATTTATGAGTGTCATCTTCAGCAATGAAGAATTGAAAGAATGGAGTACCCCTTTTTCCCTAAAAAATATCTATATTGAGCCTAAGCAATTGCTGCCGACTGTTGTTCTATAATTGCTGTGGTGTAACTAACAGCAGCTGTGGTGTAACTAACAGCAGCTGTGGTGTAACTAACAGCAGCTGTGGTATAACTAACAGTAGCTGTGGTGTAACTAACAGTAGCTGTGGTGTAACTAACAGTAGCTGTGGTATAACTAACAGCTGTGGTATAACTAACAGCAGCTGTAGTGTAACTAACAGCAGCTGTGGTGTAACTAACAGTAGCTGTGGTATAACTAACAGTAGCTGTGATATAACTAACAGCAGCTGTGTTATAACAAACAGTAGCTGTGGTGTAACTAACAGTAGCTGTGGTATAACTAACAGTAGCTGTGGTATAACTAACAGCACCTGTGGTATAACTAACAGCAGCTGTGGTAACTAAAAGCAGCTGTGGTATAACTAACGGCAGCTGTGGTGTAACTAACAGCAGCTGTGGTATAACTAACAGCAGCTGTGGTATAACTAACAGCAGCTGTGGTGTAACTAACAGCAGCTGTGGTGTAACTAGTAGCAGCTGTGGTGTAACTAACAGTAGCTGTGGTATAACTAACAGCAGCTGTGGTGTAACTAACAGCAGCTGTGGTGTAACTAACAGCAGCTGTGGTGTAACTAACAGCAGCTGTGGTGTAACTAACAGTAGCTGTGGTATAACTAACAACTGTGGTATAACTAACAGCAGCTGTGGTGTAACTAACAGTAGCTGTGGTATAACTAGCAGCAGCTGTGGTGTAACTAACAGCTGTGGTATAACTAACAGCTGTGGTGTAACTAACAGCAGCTGTGGTATAACTAACAGCAGCTGTGGTGTAACTAGCTGTGGTGTAACTAACAGCAGCTGTGGTGTAACTAACAGCAGCTGTGGTGTAACTAACAACAGCTGTGGTGTAACTAGCTTGTGATTTGATGTTCATTTCCTACTCAGTTCAAAGTAACACAGCTCATTGTAACAGCGGACAGGAAGCGCTAACAGAGGGAGAAAAAGCCTTTAACACAGAGGATGTGTGCTCCACAGTGGTGCAATACCAACGGGGATTGCTACTgtagttgtgttgttgttttatttgcgtacaaaataaaaacaacaaactGAATCCTCCTCAGTTCCTAGATGAGGTAGAATATATAGGTTTAGGTTTAATCAAACAGTTGAAACGTCTCTAAAGGAGAAATATTATATTTAAAATCTGCTCTGTCACTACCTCACTTGGCTTCACACCGTGTGTCATGTTGTTGTAAATCACAACATAGAATCTATAGACAGTTGTTATAAATCACAACCTAGAATCTATAGACAGTTGTTATAAATCACAACATAGAATCTGTAGACAGTTGTTATAAATCACAACATAGAATCTATAGACAGTTGTTATAAATCACAACCTAGAATCTATAGACAGTTGTTTTAAATCACAACATAGAATCTATAGACAGTTGTTTTAAATCACAACATAGAATCTATAGACAGTTGTTATAAATCACAACATAGAATCTATAGACAGTTGTTATAAATCACAACATAGAATCTATAGACAGTTGTTATAAATCACAACATAGAATCTATAGCCAGTTGTTATAAATCACAACCTAGAATCTATAGACTAACAAGGCAGGGTGATAAAGACACTGGGCTGCTGAGGACATCAGATGCACCAGACACTGGACATACATCACATTACTCTAGACGACTGTTCTGTCGGTTCAGACACAACGGAGCTCTAGTTATTCCCGTAGCAGGGATAGAATGGAGACTAAAAGCTGCTACGTTTTGTTTGTAGGAGAAGCCCCAGGTGATCTGGGACATAACAAGTTGATAGAGCTGAAGATTCTGTGTTGCAGTTTTCTTTAACCTTTTGGATCAATTTCTCTTCAAATGAATATATCGGCTTCGATTTTCATGTTTGTGAAAAAAACCAAGTATCATAGTGTGTGATCTGATGAACTGACCTTTCACATTCaaactgacccctgacccctgacccctgtgaGAGATGACATCATCCAAACTCGTCCTGTACTAGACGCAACACACAGACCAGGTGTGAGAACAGACAAAACAAGAGATCGCCTGTAGCTAACGACGACACCTCACCTGGAGCACTGGAGGCTGGTGGCAGCGGGAGATATCGGAGGACGGGCTCACGTTGTTAACGGCTGGAACGGGATAAAACGGAGCGGTGTGAAAACACGTGACGACGAGCCTGTCCTTAACTACATCTCCacacaccagcctccactgacccgTAACCGAGGTAACCAACATGTCCATCTATAGAAGACAAGTCATCGGGTGTGAGATAAAGCTACAAAACAAAACCAATGAGAATAACATCACTAGCTAACTAAAGATACATGTAACAGTGATTATGCCAGTCACTTCTGAGTGGTCAGTTTGGCTTGTTGTTTCCATATAGTGCCATGTTGTGAATACATTTATAATTACTTGTTAATGGAGTAAATTGAAAACctgtatttaaaaaaactttaaaaaaaacccTGTTCCAAAATATGACAGATGAATAGTTGTGTTAAAGCTAAGGGCATATTTGTTCTCAAATGGATTCTACCGGGTCAGAGAAAGAAGGAACGAGCAAAGATAACTCTGTCCTATATATTACATGTCTATTTTTCATATAACATAATAAAAACAACTTGGAATTATCATCAGCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118971 lncRNA downstream 586 1911627 ~ 1912086 (-) True G105470
TU118954 lncRNA downstream 32388 1879583 ~ 1880284 (-) True G105456
TU118952 lncRNA downstream 35485 1876079 ~ 1877187 (-) True G105455
TU118939 lncRNA downstream 47886 1864321 ~ 1864786 (-) True G105447
TU118934 lncRNA downstream 50825 1861230 ~ 1861847 (-) True G105446
TU118976 lncRNA upstream 10023 1927211 ~ 1928316 (-) True G105472
TU118977 lncRNA upstream 14083 1931271 ~ 1932179 (-) True G105473
TU118982 lncRNA upstream 19458 1936646 ~ 1937308 (-) True G105478
TU118994 lncRNA upstream 35224 1952412 ~ 1952888 (-) True G105489
TU119015 lncRNA upstream 46332 1963520 ~ 1963850 (-) True G105495
XM_036935117.1 mRNA downstream 180339 1709516 ~ 1732333 (-) False zdhhc3a
XM_036935127.1 mRNA downstream 180339 1709516 ~ 1732333 (-) False zdhhc3a
XM_036935130.1 mRNA downstream 180339 1709516 ~ 1732333 (-) False zdhhc3a
XM_036935112.1 mRNA downstream 180684 1709516 ~ 1731988 (-) False zdhhc3a
XM_036935133.1 mRNA downstream 180684 1713954 ~ 1731988 (-) True zdhhc3a
XM_036935194.1 mRNA upstream 3822 1921010 ~ 1925939 (-) True nrsn1
XM_036935207.1 mRNA upstream 385448 2302636 ~ 2303881 (-) True LOC118937333
XR_005034602.1 mRNA upstream 513087 2430275 ~ 2440302 (-) False LOC118937335
XR_005034601.1 mRNA upstream 514577 2431765 ~ 2440302 (-) False LOC118937335
XM_021593876.2 mRNA upstream 529186 2446374 ~ 2449761 (-) True sox4b
TU118763 other downstream 270940 1641267 ~ 1641732 (-) True G105340
TU118629 other downstream 293636 1593781 ~ 1619036 (-) False LOC110515405
TU118668 other downstream 370966 1540730 ~ 1541706 (-) True G105285
TU118550 other downstream 570337 1333986 ~ 1342335 (-) False G105220
TU118914 other upstream 163 1917351 ~ 1918027 (-) True G105428
TU119012 other upstream 41296 1958484 ~ 1961587 (-) True G105492
TU119210 other upstream 200891 2118079 ~ 2120501 (-) False G105636
TU119611 other upstream 445811 2362999 ~ 2363531 (-) True G105938
TU119710 other upstream 565753 2482941 ~ 2483356 (-) True G106001

Expression Profile