RNA id: TU118976


Basic Information

Item Value
RNA id TU118976
length 307
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G105472
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1927211 ~ 1928316 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGACGTCGTTCAGTGAACCATGAGTGATGAGAAACATAAACATTGTCTGAGACCTGAAGATTTGTGTTAGCAATGCAAGCCAACACCAAGGCTTCAGGTCTTCAGGTTAATGCTTTAGGTCTTCAGGTTATCACAGTCAGGGTAATGCTTTAGGTCTTCAGGTTATCACAGTCAGGATAATGCTTTAGGTATTCAGGTTATCCCAGTCAGGATAATGCTTTAGGTATTCAGGTTATCCCAGTCAGGATAATGCTTTAGGTATTCAGGTTATCCCAGTCAGGATAATGCTTTAGGTCTTCAGGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118894 lncRNA downstream 10023 1912672 ~ 1917188 (-) False G105427
TU118898 lncRNA downstream 10023 1912672 ~ 1917188 (-) False G105427
TU118886 lncRNA downstream 10216 1912592 ~ 1916995 (-) False G105427
TU118903 lncRNA downstream 10216 1912592 ~ 1916995 (-) False G105427
TU118907 lncRNA downstream 10216 1912592 ~ 1916995 (-) False G105427
TU118977 lncRNA upstream 2955 1931271 ~ 1932179 (-) True G105473
TU118982 lncRNA upstream 8330 1936646 ~ 1937308 (-) True G105478
TU118994 lncRNA upstream 24096 1952412 ~ 1952888 (-) True G105489
TU119015 lncRNA upstream 35204 1963520 ~ 1963850 (-) True G105495
TU119019 lncRNA upstream 39188 1967504 ~ 1969307 (-) False G105499
XM_036935194.1 mRNA downstream 1272 1921010 ~ 1925939 (-) True nrsn1
XM_036935117.1 mRNA downstream 194878 1709516 ~ 1732333 (-) False zdhhc3a
XM_036935127.1 mRNA downstream 194878 1709516 ~ 1732333 (-) False zdhhc3a
XM_036935130.1 mRNA downstream 194878 1709516 ~ 1732333 (-) False zdhhc3a
XM_036935112.1 mRNA downstream 195223 1709516 ~ 1731988 (-) False zdhhc3a
XM_036935207.1 mRNA upstream 374320 2302636 ~ 2303881 (-) True LOC118937333
XR_005034602.1 mRNA upstream 501959 2430275 ~ 2440302 (-) False LOC118937335
XR_005034601.1 mRNA upstream 503449 2431765 ~ 2440302 (-) False LOC118937335
XM_021593876.2 mRNA upstream 518058 2446374 ~ 2449761 (-) True sox4b
XM_036961511.1 mRNA upstream 585394 2513710 ~ 2516419 (-) True LOC110512766
TU118914 other downstream 9184 1917351 ~ 1918027 (-) True G105428
TU118889 other downstream 10216 1912592 ~ 1916995 (-) False G105427
TU118905 other downstream 10216 1912592 ~ 1916995 (-) False G105427
TU118893 other downstream 10216 1912672 ~ 1916995 (-) False G105427
TU118896 other downstream 10216 1912672 ~ 1916995 (-) False G105427
TU119012 other upstream 30168 1958484 ~ 1961587 (-) True G105492
TU119210 other upstream 189763 2118079 ~ 2120501 (-) False G105636
TU119611 other upstream 434683 2362999 ~ 2363531 (-) True G105938
TU119710 other upstream 554625 2482941 ~ 2483356 (-) True G106001
TU119712 other upstream 555544 2483860 ~ 2485123 (-) True G106003

Expression Profile