RNA id: TU119015


Basic Information

Item Value
RNA id TU119015
length 331
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G105495
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1963520 ~ 1963850 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttttaatgggatctctacataggcgtacagaggcccattatcagcaaccatcactcctgtgttccaatggcacgttgtgttagctaatccaagtttatcattttaaaaggctaattgatcattagaaaacccttttgcaattatgttagcacagctgaaaactgttgttctgattaaataatcaattaaactggccttctttagactagttgagtatttggagcatcagcatttgtgggtttgattacgggctcaaaatggccagaaacaaagacctttcttctgaaactcatcagtctattcttgttctgcgtgaaattgccaagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118994 lncRNA downstream 10632 1952412 ~ 1952888 (-) True G105489
TU118982 lncRNA downstream 26212 1936646 ~ 1937308 (-) True G105478
TU118977 lncRNA downstream 31341 1931271 ~ 1932179 (-) True G105473
TU118976 lncRNA downstream 35204 1927211 ~ 1928316 (-) True G105472
TU118894 lncRNA downstream 46332 1912672 ~ 1917188 (-) False G105427
TU119019 lncRNA upstream 3654 1967504 ~ 1969307 (-) False G105499
TU119020 lncRNA upstream 3654 1967504 ~ 1969307 (-) True G105499
TU119026 lncRNA upstream 8832 1972682 ~ 1973050 (-) True G105505
TU119137 lncRNA upstream 25428 1989278 ~ 2080958 (-) True G105574
TU119140 lncRNA upstream 34746 1998596 ~ 1998853 (-) True G105577
XM_036935194.1 mRNA downstream 37581 1921010 ~ 1925939 (-) True nrsn1
XM_036935117.1 mRNA downstream 231187 1709516 ~ 1732333 (-) False zdhhc3a
XM_036935207.1 mRNA upstream 338786 2302636 ~ 2303881 (-) True LOC118937333
XR_005034602.1 mRNA upstream 466425 2430275 ~ 2440302 (-) False LOC118937335
XR_005034601.1 mRNA upstream 467915 2431765 ~ 2440302 (-) False LOC118937335
XM_021593876.2 mRNA upstream 482524 2446374 ~ 2449761 (-) True sox4b
XM_036961511.1 mRNA upstream 549860 2513710 ~ 2516419 (-) True LOC110512766
TU119012 other downstream 1933 1958484 ~ 1961587 (-) True G105492
TU118914 other downstream 45493 1917351 ~ 1918027 (-) True G105428
TU118902 other downstream 46525 1912672 ~ 1916995 (-) False G105427
TU119210 other upstream 154229 2118079 ~ 2120501 (-) False G105636
TU119611 other upstream 399149 2362999 ~ 2363531 (-) True G105938
TU119710 other upstream 519091 2482941 ~ 2483356 (-) True G106001
TU119712 other upstream 520010 2483860 ~ 2485123 (-) True G106003
TU121654 other upstream 1788711 3752561 ~ 3776178 (-) False LOC110506994

Expression Profile