RNA id: TU119019


Basic Information

Item Value
RNA id TU119019
length 1413
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id G105499
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1967504 ~ 1969307 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtttgaaatatccaataaatgttgtttcacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcacagtATATTAAATTACTATGGTCTTCTGTGTTGTAACTGTCTATTGTCTGACTGTGTTGTAACTGTCTATTGTCTGACTGTGTTGTAACTGTCTATTGTCTGACTGTTGTAACTGTCTGTTGTCTGACTGTGTTGTAACAGTCTGACTGTGTTGTAACTGTCTGTTGTCTGACTGTGTTGTAACTGTCTGATGTCTGACTGTTGTAACTGTCTGTTGTCTGACTGTTGTAACTGTCTGTTGTCTGACTGTGTTGTAACTGTCTATTGTCTTCTATGTTGCAACTGTCTATTGTCTGACTGTGTTGTAACTGTCTGTTGTCTGACTGTGTTGTAACGGTCTATTGTCTGACTGTGTTGTAACTGTCTATTGTCTGACTGTGTTGTAACTGTCTATTGTCTGACTGTGTTGTAACTGTCTATTgtctgactgtgttgtaaCTGTCTATTGTCTGACTGTTGTAACTGTCTGTTGTCTGACTGTGTTGTAACGGTCTATTGTCTGACTGTGTTGTAACTGTCTATTGTCTGACTGTGTTGTAACTGTCTATTGTCTGACTATGTTGTAACTGTCTATTGTCTGACTGTGTTGTAACTGTCTATTGTCTGACTGTGTTGTAACTGTCTATTGTCTGACTGTGTTGTAACTGTCTATTGTCTGACTATGTTGTAACTGTCTATTGTCTGACTGTGTTGTAACTGTCTATTGTCTGACTgttgtaactctgttgtctgaCTGTTGTAACTGTCTGTTGTCTGACTGTGTTGTAACAGTCTGACTGTGTTGTAACTGTCTGTTGTCTGACTGTGTTGTAACTGTCTGTTGTCTGACTGTGTTGTAACTGTCTATTGTCTGACTGTTGTAACTGTCTATTGTCTGACTGTGTTGTAGCTGTCTATTGTCTGACTGTGTTGTAACTGTCTATTGTCTGACTATGTTGTAACTGCAGTTCAtttagagatacagtatattatcacACTGTTTATCAAAATAATCTCTGATTCGCTCAAGCCTCGTTGTGAGTATGCAGTGCTACTCAAAAACAGTCAGTCCTCAGGGGTTCTAGATTCCTAGAACTagatataatagacaggagtaaaCAGGGTTCTCGATTCCTAGAACTAGATATAATAGACAGGACTAAACATAGGGTTCTAGATTCCTAGAACTAGATATAATAGACAGGACTAAACAGGGTTTTAGATTCCTAGAACTAGATATAATAGACAGGAATAAACAGGCTTCTAGATTCCTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119015 lncRNA downstream 3654 1963520 ~ 1963850 (-) True G105495
TU118994 lncRNA downstream 14616 1952412 ~ 1952888 (-) True G105489
TU118982 lncRNA downstream 30196 1936646 ~ 1937308 (-) True G105478
TU118977 lncRNA downstream 35325 1931271 ~ 1932179 (-) True G105473
TU118976 lncRNA downstream 39188 1927211 ~ 1928316 (-) True G105472
TU119026 lncRNA upstream 3375 1972682 ~ 1973050 (-) True G105505
TU119137 lncRNA upstream 19971 1989278 ~ 2080958 (-) True G105574
TU119140 lncRNA upstream 29289 1998596 ~ 1998853 (-) True G105577
TU119150 lncRNA upstream 55516 2024823 ~ 2025198 (-) True G105586
TU119176 lncRNA upstream 79384 2048691 ~ 2050005 (-) True G105606
XM_036935194.1 mRNA downstream 41565 1921010 ~ 1925939 (-) True nrsn1
XM_036935117.1 mRNA downstream 235171 1709516 ~ 1732333 (-) False zdhhc3a
XM_036935207.1 mRNA upstream 333329 2302636 ~ 2303881 (-) True LOC118937333
XR_005034602.1 mRNA upstream 460968 2430275 ~ 2440302 (-) False LOC118937335
XR_005034601.1 mRNA upstream 462458 2431765 ~ 2440302 (-) False LOC118937335
XM_021593876.2 mRNA upstream 477067 2446374 ~ 2449761 (-) True sox4b
XM_036961511.1 mRNA upstream 544403 2513710 ~ 2516419 (-) True LOC110512766
TU119012 other downstream 5917 1958484 ~ 1961587 (-) True G105492
TU118914 other downstream 49477 1917351 ~ 1918027 (-) True G105428
TU118909 other downstream 50509 1912672 ~ 1916995 (-) False G105427
TU119210 other upstream 148772 2118079 ~ 2120501 (-) False G105636
TU119611 other upstream 393692 2362999 ~ 2363531 (-) True G105938
TU119710 other upstream 513634 2482941 ~ 2483356 (-) True G106001
TU119712 other upstream 514553 2483860 ~ 2485123 (-) True G106003
TU121654 other upstream 1783254 3752561 ~ 3776178 (-) False LOC110506994

Expression Profile