RNA id: TU119050


Basic Information

Item Value
RNA id TU119050
length 469
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G105525
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2001989 ~ 2002531 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggggggctgagtgaGGTATTTCAGAGATGACCGTGACAGAGTTGACCGTGACAGAGTTGACCGTGACAGAGTTGACCGTGACAGAGTTGACCGTAATTCAGCCATAAATCACCTGGTGACAGGGGGAATGGTAGCTTGTTATGTTCAACATGGAAGCTTCATTGACGTGTTAGcatgtctatctatgggtaacagggttgacgtgttagcatgtctatctatgggtaacagggttgacgtgttagcaTGTCTATCTAtgggtaacagggttgatgtgttagcATGTCTATCTAtggggtaacagggttgatgtgttagcATGTCTATCTAtggggtaacagggttgacgtgttagcaTGTCTATCTAtggggtaacagggttgacgtgttagcaTGTCTATccatgggtaacagggttgatgtgttagcATGTCTATCTAtggggtaacagggttgacttgttatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119041 lncRNA upstream 13821 1987747 ~ 1988168 (+) True G105518
TU119025 lncRNA upstream 28860 1972750 ~ 1973129 (+) True G105504
TU119023 lncRNA upstream 29913 1971724 ~ 1972076 (+) True G105502
TU118502 lncRNA upstream 32397 1968382 ~ 1969592 (+) True G105189
TU118486 lncRNA upstream 59038 1942693 ~ 1942951 (+) True G105178
TU119054 lncRNA downstream 3930 2006461 ~ 2007221 (+) True G105527
TU119056 lncRNA downstream 13546 2016077 ~ 2017610 (+) False G105529
TU119057 lncRNA downstream 13546 2016077 ~ 2018117 (+) True G105529
TU119065 lncRNA downstream 26234 2028765 ~ 2029966 (+) True G105536
TU119082 lncRNA downstream 46150 2048681 ~ 2050314 (+) True G105548
XM_036935163.1 mRNA upstream 100541 1865365 ~ 1901448 (+) False LOC110511503
XM_036935200.1 mRNA downstream 114022 2116553 ~ 2120455 (+) True LOC110516539
XM_036961504.1 mRNA downstream 163590 2166121 ~ 2177996 (+) True LOC118944029
XM_036961507.1 mRNA downstream 415655 2418186 ~ 2420621 (+) True LOC118944030
XR_005034608.1 mRNA downstream 975705 2978236 ~ 2978524 (+) True LOC118937340
XR_005034604.1 mRNA downstream 976255 2978786 ~ 2980193 (+) False LOC118937337
TU118283 other upstream 291432 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 301558 1699073 ~ 1700431 (+) True G105036
TU118057 other upstream 649126 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 848240 1153061 ~ 1153749 (+) True G104761
TU116939 other upstream 1129474 860506 ~ 872515 (+) True cmc1
TU119728 other downstream 518185 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 715430 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 972292 2974823 ~ 3039475 (+) True G106240
TU120034 other downstream 1204266 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 1364674 3367205 ~ 3425955 (+) False mboat1

Expression Profile