RNA id: TU119082


Basic Information

Item Value
RNA id TU119082
length 308
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G105548
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2048681 ~ 2050314 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGAAGGCTTAGCAGAACAGCAGTCAGAAGAGAAGCTTCGGGGAAATAAGATGATCTGAATTTAAATACATGGCTGCTTTAAGTCCTAACGGTGTATAACATCACCAAGTAGAAATGAAGGTCTCTGAGTCCATCAGGATACTAGACTACTGGAGTAGAGAGTCTCAGGATACTGGACTACTGGAGTAGAGAGTCTCAGGATACTAGACTACTGGAGTAGAGAGTCTCAGGATACTAGACTACTGGAGTAGAGAGGGTCTCAGGATACTGGACTACTGGAGTAGAGAGGGTCTCAGGATACTAGACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119065 lncRNA upstream 18715 2028765 ~ 2029966 (+) True G105536
TU119057 lncRNA upstream 30564 2016077 ~ 2018117 (+) True G105529
TU119056 lncRNA upstream 31071 2016077 ~ 2017610 (+) False G105529
TU119054 lncRNA upstream 41460 2006461 ~ 2007221 (+) True G105527
TU119050 lncRNA upstream 46150 2001989 ~ 2002531 (+) True G105525
TU119109 lncRNA downstream 14823 2065137 ~ 2066926 (+) False G105556
TU119111 lncRNA downstream 14823 2065137 ~ 2066926 (+) True G105556
TU119133 lncRNA downstream 50641 2100955 ~ 2101640 (+) True G105571
TU119134 lncRNA downstream 53067 2103381 ~ 2107628 (+) True G105572
TU119227 lncRNA downstream 73181 2123495 ~ 2124035 (+) True G105639
XM_036935163.1 mRNA upstream 147233 1865365 ~ 1901448 (+) False LOC110511503
XM_036935200.1 mRNA downstream 66239 2116553 ~ 2120455 (+) True LOC110516539
XM_036961504.1 mRNA downstream 115807 2166121 ~ 2177996 (+) True LOC118944029
XM_036961507.1 mRNA downstream 367872 2418186 ~ 2420621 (+) True LOC118944030
XR_005034608.1 mRNA downstream 927922 2978236 ~ 2978524 (+) True LOC118937340
XR_005034604.1 mRNA downstream 928472 2978786 ~ 2980193 (+) False LOC118937337
TU118283 other upstream 338124 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 348250 1699073 ~ 1700431 (+) True G105036
TU118057 other upstream 695818 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 894932 1153061 ~ 1153749 (+) True G104761
TU116939 other upstream 1176166 860506 ~ 872515 (+) True cmc1
TU119728 other downstream 470402 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 667647 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 924509 2974823 ~ 3039475 (+) True G106240
TU120034 other downstream 1156483 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 1316891 3367205 ~ 3425955 (+) False mboat1

Expression Profile