RNA id: TU119109


Basic Information

Item Value
RNA id TU119109
length 233
lncRNA type inter_gene
GC content 0.31
exon number 3
gene id G105556
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2065137 ~ 2066926 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCAGAGAGGGGTACTGTAACTGACAATGTTAGAGAGAGGTACTGTAACTGACAATGGCAGAGAGAGGTACTGTAACTGACAACGTCAGAGAGAGGTACTGTAACTGACAATGTTAGAGAGAGGTACTGTAACTGACAACATCAGAGAGAGGTACTGTAACTGACAACATCAGAGAGAGGTACTGTAACTGACAACATCAGAGAGAGGTACTGTAACTGATAACGTCAGAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119082 lncRNA upstream 14823 2048681 ~ 2050314 (+) True G105548
TU119065 lncRNA upstream 35171 2028765 ~ 2029966 (+) True G105536
TU119057 lncRNA upstream 47020 2016077 ~ 2018117 (+) True G105529
TU119056 lncRNA upstream 47527 2016077 ~ 2017610 (+) False G105529
TU119054 lncRNA upstream 57916 2006461 ~ 2007221 (+) True G105527
TU119133 lncRNA downstream 34029 2100955 ~ 2101640 (+) True G105571
TU119134 lncRNA downstream 36455 2103381 ~ 2107628 (+) True G105572
TU119227 lncRNA downstream 56569 2123495 ~ 2124035 (+) True G105639
TU119230 lncRNA downstream 65829 2132755 ~ 2133621 (+) True G105642
TU119245 lncRNA downstream 81540 2148466 ~ 2148711 (+) True G105654
XM_036935163.1 mRNA upstream 163689 1865365 ~ 1901448 (+) False LOC110511503
XM_036935200.1 mRNA downstream 49627 2116553 ~ 2120455 (+) True LOC110516539
XM_036961504.1 mRNA downstream 99195 2166121 ~ 2177996 (+) True LOC118944029
XM_036961507.1 mRNA downstream 351260 2418186 ~ 2420621 (+) True LOC118944030
XR_005034608.1 mRNA downstream 911310 2978236 ~ 2978524 (+) True LOC118937340
XR_005034604.1 mRNA downstream 911860 2978786 ~ 2980193 (+) False LOC118937337
TU118283 other upstream 354580 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 364706 1699073 ~ 1700431 (+) True G105036
TU118057 other upstream 712274 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 911388 1153061 ~ 1153749 (+) True G104761
TU116939 other upstream 1192622 860506 ~ 872515 (+) True cmc1
TU119728 other downstream 453790 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 651035 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 907897 2974823 ~ 3039475 (+) True G106240
TU120034 other downstream 1139871 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 1300279 3367205 ~ 3425955 (+) False mboat1

Expression Profile