RNA id: TU119133


Basic Information

Item Value
RNA id TU119133
length 470
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G105571
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2100955 ~ 2101640 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATATTAGTGGTTAATTATCCTAGATTTATCCTGCTTTTCATCGTGTGTAGATCCCCTTCCATGTTACTGGTATGTCTAGTTTATTCACCCTGACAAACACTTAACTATTCAGGTTTGCAGCAATTGCATTTAGACTCTAGAGCAGGACTCTCtaaccctgttcttggagagctaccgtcctgtaggtttttccTCCAAGCCTAATCTAGCGCAAATGATTCTAATAGTTAGCTGGTTGATATATttaatcaggttagttacagctggtgttggattgaaaacctacaggagggtatctctccaggaacagggttagagttaaaacCTATAGGATGGTATCGCTCCAGgagcagggttggagttaaaacctacagcaGGGTAtctgtccaggaacagggttggagttaaaacctacagcaGGGTAtctgtccaggaacagggttggagttaaaacctaaaGCAGGGTAt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119109 lncRNA upstream 34029 2065137 ~ 2066926 (+) False G105556
TU119111 lncRNA upstream 34029 2065137 ~ 2066926 (+) True G105556
TU119082 lncRNA upstream 50641 2048681 ~ 2050314 (+) True G105548
TU119065 lncRNA upstream 70989 2028765 ~ 2029966 (+) True G105536
TU119057 lncRNA upstream 82838 2016077 ~ 2018117 (+) True G105529
TU119134 lncRNA downstream 1741 2103381 ~ 2107628 (+) True G105572
TU119227 lncRNA downstream 21855 2123495 ~ 2124035 (+) True G105639
TU119230 lncRNA downstream 31115 2132755 ~ 2133621 (+) True G105642
TU119245 lncRNA downstream 46826 2148466 ~ 2148711 (+) True G105654
TU119262 lncRNA downstream 57932 2159572 ~ 2160487 (+) True G105670
XM_036935163.1 mRNA upstream 199507 1865365 ~ 1901448 (+) False LOC110511503
XM_036935200.1 mRNA downstream 14913 2116553 ~ 2120455 (+) True LOC110516539
XM_036961504.1 mRNA downstream 64481 2166121 ~ 2177996 (+) True LOC118944029
XM_036961507.1 mRNA downstream 316546 2418186 ~ 2420621 (+) True LOC118944030
XR_005034608.1 mRNA downstream 876596 2978236 ~ 2978524 (+) True LOC118937340
XR_005034604.1 mRNA downstream 877146 2978786 ~ 2980193 (+) False LOC118937337
TU118283 other upstream 390398 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 400524 1699073 ~ 1700431 (+) True G105036
TU118057 other upstream 748092 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 947206 1153061 ~ 1153749 (+) True G104761
TU116939 other upstream 1228440 860506 ~ 872515 (+) True cmc1
TU119728 other downstream 419076 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 616321 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 873183 2974823 ~ 3039475 (+) True G106240
TU120034 other downstream 1105157 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 1265565 3367205 ~ 3425955 (+) False mboat1

Expression Profile