RNA id: TU119220


Basic Information

Item Value
RNA id TU119220
length 1343
lncRNA type antisense_over
GC content 0.41
exon number 6
gene id G105636
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2118079 ~ 2120501 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tggaaTAGGGCTACAATGTTATCATGGAACTAAAGACACGGCGTTCTCTACTTGAGGATGCTGAACTTTATTGATGACATGACATGCGTCCATGATGTTTTACTTCATTCAATGTATACAGAAAATAACATTTGGAAATCATCGTAAAAATTACGCCATGCTTCTGGAGTCAACGGCTATTCTGTTGTTGACCCAATCTGTCGACATGGTCAGTAATAATGTAATCATTTGGGCTACTACAGTATCAGAACATGAGAGATTAGGTCAGTCATAATGTAATCATTTGGGCTACTACAGTATCAGAACATGAGCGATTAGGTcagtaataatgtaataatttGGGCTACTACAGTATCAGAACATGAGAGATTAGGTCAGTCATAATGTAATCATTTGGGCTACTACAGTATCAGAACATGAGAGATTAGGTCAGTCATAATGTAATCATTTGGGCTACTACAGTATCAGAACATGAGAGATTAGGTCAGTAATAATGTAATCATTTGGGTTACTACAGTATCAGAACATGAGAGATTAGGTCAGTAATAATGTAATCATTTGGGCTACTACGGTATAAGAATAAATTCTTTCTCACCAAAACAAGTAAAACATTGACTGATATTTCATCCGgccaagatgtgtgtgtgtgtaatacgtCTGTATTTGTAAAGGAATGTAATTAGTTGACAGTATCCTAACCAGTATCCTAACCCATATCCTAACCTCGTCCCCAGTTGTCCCTTGTGTTTACTGTTTGTCAGAATATTGTGACAACAAAACATACCATGGTCACCCCATATTTCCATGTACTATTTGATGCAGGCCATTGATCCTGTCTTACTGCCCATTGGTCTAACTCTACATGTAGCCCCGCCCACTTGCTTGTGTGTCATTGGGCCGGAACGCACCGGAAATTGGAAGACAAACTGGCCGTGCCGTTGTTGCCAGGCTACACAAGGTGGTTATTATGGGTCTCTTTAGTAGATCTTAAAGGCGGTGAGCTTTAAGTCCCCTCTGACACGGACGTAGGTAATGACGTCCAGGACGGTACGGTTGAGGAATTTGATCTCATGTCCATTAGGCATCTCCACTTCAAACACGTCTCCGGTCAGCTTCAGGACAAtctCCTTCGGTCCAGTCAGGACTCTCTTCCCATCCCAACAATTGTCCCACCTTGACAGTAGAACCCCtttggaggtcactgtgtttctctctctcctcgtgaCCCCAGCAGCCGTCAATCTTGGAGTTGCACACAAGCACAGCACCGTCCGTGTCATCCTCAAAACGTGGGTTGAAGTGCAGTGCCAGGTGATCTTCGTCACAGCCCAGTTCTATCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119202 lncRNA downstream 9120 2104666 ~ 2108959 (-) True G105629
TU119198 lncRNA downstream 24605 2092467 ~ 2093474 (-) False G105626
TU119197 lncRNA downstream 24605 2092632 ~ 2093474 (-) True G105626
TU119193 lncRNA downstream 46528 2070719 ~ 2071551 (-) True G105622
TU119184 lncRNA downstream 57427 2059883 ~ 2060652 (-) True G105613
TU119226 lncRNA upstream 735 2121236 ~ 2121464 (-) True G105638
TU119228 lncRNA upstream 6279 2126780 ~ 2127108 (-) True G105640
TU119229 lncRNA upstream 9609 2130110 ~ 2130359 (-) True G105641
TU119231 lncRNA upstream 13746 2134247 ~ 2134450 (-) True G105643
TU119247 lncRNA upstream 28397 2148898 ~ 2149330 (-) True G105656
XM_036935194.1 mRNA downstream 192140 1921010 ~ 1925939 (-) True nrsn1
XM_036935117.1 mRNA downstream 385746 1709516 ~ 1732333 (-) False zdhhc3a
XM_036935207.1 mRNA upstream 182135 2302636 ~ 2303881 (-) True LOC118937333
XR_005034602.1 mRNA upstream 309774 2430275 ~ 2440302 (-) False LOC118937335
XR_005034601.1 mRNA upstream 311264 2431765 ~ 2440302 (-) False LOC118937335
XM_021593876.2 mRNA upstream 325873 2446374 ~ 2449761 (-) True sox4b
XM_036961511.1 mRNA upstream 393209 2513710 ~ 2516419 (-) True LOC110512766
TU119012 other downstream 156492 1958484 ~ 1961587 (-) True G105492
TU118914 other downstream 200052 1917351 ~ 1918027 (-) True G105428
TU118909 other downstream 201084 1912672 ~ 1916995 (-) False G105427
TU119611 other upstream 242498 2362999 ~ 2363531 (-) True G105938
TU119710 other upstream 362440 2482941 ~ 2483356 (-) True G106001
TU119712 other upstream 363359 2483860 ~ 2485123 (-) True G106003
TU121654 other upstream 1632060 3752561 ~ 3776178 (-) False LOC110506994
TU121655 other upstream 1632060 3752561 ~ 3776178 (-) True LOC110506994

Expression Profile