RNA id: TU119372


Basic Information

Item Value
RNA id TU119372
length 241
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G105750
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2246609 ~ 2246849 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagagggagaaggagagagagagaaggagagaacccCTGGGGGGGtacaaacaaaggatccaatagaggaaagtcgtattccaggtcgtaatgctggtgagttaccgccactctgatatccaaaagttatttccggctgtatgtaataacacacacaagAAAAAACGACATACTgaaaagttgcttaggagctggaagcagagctgccacatctgtcggcgccatcttgtctAGATATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119358 lncRNA upstream 11092 2234062 ~ 2235517 (+) True G105740
TU119355 lncRNA upstream 12870 2232803 ~ 2233739 (+) True G105738
TU119305 lncRNA upstream 18882 2227470 ~ 2227727 (+) True G105704
TU119303 lncRNA upstream 20521 2225718 ~ 2226088 (+) True G105702
TU119301 lncRNA upstream 23190 2223199 ~ 2223419 (+) True G105700
TU119374 lncRNA downstream 1315 2248164 ~ 2248504 (+) True G105752
TU119379 lncRNA downstream 7899 2254748 ~ 2255015 (+) True G105757
TU119382 lncRNA downstream 9698 2256547 ~ 2256907 (+) True G105760
TU119384 lncRNA downstream 10669 2257518 ~ 2257756 (+) True G105762
TU119392 lncRNA downstream 24213 2271062 ~ 2271645 (+) True G105770
XM_036961504.1 mRNA upstream 68613 2166121 ~ 2177996 (+) True LOC118944029
XM_036935200.1 mRNA upstream 126154 2116553 ~ 2120455 (+) True LOC110516539
XM_036935173.1 mRNA upstream 345161 1865365 ~ 1901448 (+) False LOC110511503
XM_036961507.1 mRNA downstream 171337 2418186 ~ 2420621 (+) True LOC118944030
XR_005034608.1 mRNA downstream 731387 2978236 ~ 2978524 (+) True LOC118937340
XR_005034604.1 mRNA downstream 731937 2978786 ~ 2980193 (+) False LOC118937337
XR_005034605.1 mRNA downstream 731964 2978813 ~ 2980193 (+) False LOC118937337
XR_005034606.1 mRNA downstream 731980 2978829 ~ 2980193 (+) False LOC118937337
TU118283 other upstream 536052 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 546178 1699073 ~ 1700431 (+) True G105036
TU118057 other upstream 893746 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 1092860 1153061 ~ 1153749 (+) True G104761
TU116939 other upstream 1374094 860506 ~ 872515 (+) True cmc1
TU119728 other downstream 273867 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 471112 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 727974 2974823 ~ 3039475 (+) True G106240
TU120034 other downstream 959948 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 1120356 3367205 ~ 3425955 (+) False mboat1

Expression Profile