RNA id: TU119426


Basic Information

Item Value
RNA id TU119426
length 476
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G105803
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2331403 ~ 2333175 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGGCTGTGTGATATGCTGAGGTCAACAGTGTATTACTAGAGAACAGGAGACTGTCTGGCTGTGTGATAGGCTGAGGTCAACAGTGTATTACTAGAGAACAAGACAGGAGACTGTCTGGCTGTGTGATATGCTGAGGTCAACAGTGTATTACtagagaacaggacaggagacTGTCTGGCTGTGTGATGTGCTGAGGTCAACAGTGTATTACtagagaacaggacaggagacTGTCTGGCTGTGTGATATGCTGAGGTCAACAGTGTATTACTAGAGAACAGGAGACTGTCTGGCTGTGTGATATGCTGAGGTCAACAGTGAATTACtagagaacaggacaggagacTGTCTGGCTGTGTGATATGCTGAGGTCAACAGTGTATTACtagagaacaggacaggagacTGTCTGGCTGTGTGATATGCTGAGGTCAACAGTGTATTActagagaacagaacaggagaCTGTCTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119417 lncRNA upstream 21543 2310629 ~ 2311097 (+) True G105794
TU119415 lncRNA upstream 22492 2308664 ~ 2310148 (+) True G105792
TU119392 lncRNA upstream 60995 2271062 ~ 2271645 (+) True G105770
TU119384 lncRNA upstream 74884 2257518 ~ 2257756 (+) True G105762
TU119382 lncRNA upstream 75733 2256547 ~ 2256907 (+) True G105760
TU119431 lncRNA downstream 649 2333824 ~ 2334341 (+) True G105804
TU119436 lncRNA downstream 2873 2336048 ~ 2336506 (+) True G105806
TU119456 lncRNA downstream 29681 2362856 ~ 2363663 (+) True G105822
TU119458 lncRNA downstream 31618 2364793 ~ 2365507 (+) True G105824
TU119477 lncRNA downstream 48170 2381345 ~ 2382047 (+) True G105837
XM_036961504.1 mRNA upstream 154644 2166121 ~ 2177996 (+) True LOC118944029
XM_036935200.1 mRNA upstream 212185 2116553 ~ 2120455 (+) True LOC110516539
XM_036935173.1 mRNA upstream 431192 1865365 ~ 1901448 (+) False LOC110511503
XM_036961507.1 mRNA downstream 85011 2418186 ~ 2420621 (+) True LOC118944030
XR_005034608.1 mRNA downstream 645061 2978236 ~ 2978524 (+) True LOC118937340
XR_005034604.1 mRNA downstream 645611 2978786 ~ 2980193 (+) False LOC118937337
XR_005034605.1 mRNA downstream 645638 2978813 ~ 2980193 (+) False LOC118937337
XR_005034606.1 mRNA downstream 645654 2978829 ~ 2980193 (+) False LOC118937337
TU118283 other upstream 622083 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 632209 1699073 ~ 1700431 (+) True G105036
TU118057 other upstream 979777 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 1178891 1153061 ~ 1153749 (+) True G104761
TU116939 other upstream 1460125 860506 ~ 872515 (+) True cmc1
TU119728 other downstream 187541 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 384786 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 641648 2974823 ~ 3039475 (+) True G106240
TU120034 other downstream 873622 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 1034030 3367205 ~ 3425955 (+) False mboat1

Expression Profile