RNA id: TU119436


Basic Information

Item Value
RNA id TU119436
length 390
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G105806
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2336048 ~ 2336506 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCAGTacccatctcctcctctgacaGCAGTATGGTAGTATGTCTACTGTCTTAATGTATAGCTCTGATGTAGGATATGCAGAacccatctcctcctctgacaGCAGTACGGTAGTATATCTACTGTCTTAATGTATAGCTCTGATGTAGGATATGCAGTacccatctcctcctctgacagcagtatGGTAGTATATCTACTGTCTTAATGTATAGCTCTGATGTAGGATATGCAGAacccatctcctcctctgacagcagtatatctactgtcttaATGTATAGCTCTGATGTAGGATATGCAGAACCCATCTCCTCTGAGAGCAGCACAGTAGTATTTCTCCTTTCTTCTTGTATTTCTGTAGTCGTTCTCAAGATCCAATGCTGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119431 lncRNA upstream 1707 2333824 ~ 2334341 (+) True G105804
TU119429 lncRNA upstream 2873 2331403 ~ 2333175 (+) False G105803
TU119426 lncRNA upstream 2873 2332640 ~ 2333175 (+) True G105803
TU119417 lncRNA upstream 24951 2310629 ~ 2311097 (+) True G105794
TU119415 lncRNA upstream 25900 2308664 ~ 2310148 (+) True G105792
TU119456 lncRNA downstream 26350 2362856 ~ 2363663 (+) True G105822
TU119458 lncRNA downstream 28287 2364793 ~ 2365507 (+) True G105824
TU119477 lncRNA downstream 44839 2381345 ~ 2382047 (+) True G105837
TU119479 lncRNA downstream 48485 2384991 ~ 2385370 (+) True G105839
TU119494 lncRNA downstream 56976 2393482 ~ 2395688 (+) False G105847
XM_036961504.1 mRNA upstream 158052 2166121 ~ 2177996 (+) True LOC118944029
XM_036935200.1 mRNA upstream 215593 2116553 ~ 2120455 (+) True LOC110516539
XM_036935173.1 mRNA upstream 434600 1865365 ~ 1901448 (+) False LOC110511503
XM_036961507.1 mRNA downstream 81680 2418186 ~ 2420621 (+) True LOC118944030
XR_005034608.1 mRNA downstream 641730 2978236 ~ 2978524 (+) True LOC118937340
XR_005034604.1 mRNA downstream 642280 2978786 ~ 2980193 (+) False LOC118937337
XR_005034605.1 mRNA downstream 642307 2978813 ~ 2980193 (+) False LOC118937337
XR_005034606.1 mRNA downstream 642323 2978829 ~ 2980193 (+) False LOC118937337
TU118283 other upstream 625491 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 635617 1699073 ~ 1700431 (+) True G105036
TU118057 other upstream 983185 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 1182299 1153061 ~ 1153749 (+) True G104761
TU116939 other upstream 1463533 860506 ~ 872515 (+) True cmc1
TU119728 other downstream 184210 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 381455 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 638317 2974823 ~ 3039475 (+) True G106240
TU120034 other downstream 870291 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 1030699 3367205 ~ 3425955 (+) False mboat1

Expression Profile