RNA id: TU119458


Basic Information

Item Value
RNA id TU119458
length 472
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G105824
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2364793 ~ 2365507 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCAACATATTGCCATGTAGTCTACAGTTCAACATATTGCCATGTAGTCTACAGTTCAACATAGTACCATGTAGTCTACAGTTCAACATAGTACCATGTAGTCTACAGTTCATCATAGTACCATGTAGTCTACAGTTCATCATAGTACCATGTAGTCTACAGTTCAACATAGTACCATGTAGTCTACAGTTCAACATAGTACCATGTAGTCTACAGTTCAACATATTGCCATGTAGTCTACAGTTCAACATATTGCCATGCTGGTCAAATGCAAAGGACTGTTAAACTAATTGTTTTCCCAGCAAATGATACTGAAGGCAagaaaaaatataatatataaacgTATTGGAGATCAATGGGAGTGCAGTGTCGGCTAAGCTAAGAACGTCTGTCCAGGTTCTGAATCTACTACGACTGGCTGTGATCTAGGAAGCAGCTACATGAAATCACTTTCTGCTGAATATGTATCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119456 lncRNA upstream 1130 2362856 ~ 2363663 (+) True G105822
TU119436 lncRNA upstream 28287 2336048 ~ 2336506 (+) True G105806
TU119431 lncRNA upstream 30452 2333824 ~ 2334341 (+) True G105804
TU119429 lncRNA upstream 31618 2331403 ~ 2333175 (+) False G105803
TU119426 lncRNA upstream 31618 2332640 ~ 2333175 (+) True G105803
TU119477 lncRNA downstream 15838 2381345 ~ 2382047 (+) True G105837
TU119479 lncRNA downstream 19484 2384991 ~ 2385370 (+) True G105839
TU119494 lncRNA downstream 27975 2393482 ~ 2395688 (+) False G105847
TU119495 lncRNA downstream 27975 2393482 ~ 2395688 (+) False G105847
TU119491 lncRNA downstream 28248 2393755 ~ 2395688 (+) False G105847
XM_036961504.1 mRNA upstream 186797 2166121 ~ 2177996 (+) True LOC118944029
XM_036935200.1 mRNA upstream 244338 2116553 ~ 2120455 (+) True LOC110516539
XM_036935173.1 mRNA upstream 463345 1865365 ~ 1901448 (+) False LOC110511503
XM_036961507.1 mRNA downstream 52679 2418186 ~ 2420621 (+) True LOC118944030
XR_005034608.1 mRNA downstream 612729 2978236 ~ 2978524 (+) True LOC118937340
XR_005034604.1 mRNA downstream 613279 2978786 ~ 2980193 (+) False LOC118937337
XR_005034605.1 mRNA downstream 613306 2978813 ~ 2980193 (+) False LOC118937337
XR_005034606.1 mRNA downstream 613322 2978829 ~ 2980193 (+) False LOC118937337
TU118283 other upstream 654236 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 664362 1699073 ~ 1700431 (+) True G105036
TU118057 other upstream 1011930 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 1211044 1153061 ~ 1153749 (+) True G104761
TU116939 other upstream 1492278 860506 ~ 872515 (+) True cmc1
TU119728 other downstream 155209 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 352454 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 609316 2974823 ~ 3039475 (+) True G106240
TU120034 other downstream 841290 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 1001698 3367205 ~ 3425955 (+) False mboat1

Expression Profile