RNA id: TU119713


Basic Information

Item Value
RNA id TU119713
length 421
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G106004
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2485197 ~ 2485617 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcatatTATTTATATAAAATCAATGTACACTAACAACAAGTTTGCAgttaaattagctttaaaacaggcAGATGTATTTCTTCAGGGGCCGTGGGATgaaacagggatgcagcttgaggcCCACCCCCTTcaacatatacactacatgatcaaaagtatgctCTTCAAACATCTCaatacaaaatcatgggcattaacatggatATTAATATTGGTCCCCCTTttatgctataacagcctccactcttctaggaaggctttccactagatgttggaacattgctgtgaggacttgcttccatttagccacaagagcattagtgaggtcgggcactgatgttgggcgattaggcctggctcgcagtcggcgttccaattcatcccaaaggtgtttgatggggttgaggtcagagctctgtac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119711 lncRNA upstream 51 2484797 ~ 2485146 (+) True G106002
TU119546 lncRNA upstream 16699 2466823 ~ 2468498 (+) True G105889
TU119544 lncRNA upstream 18626 2465164 ~ 2466571 (+) False G105888
TU119545 lncRNA upstream 18908 2465164 ~ 2466289 (+) True G105888
TU119543 lncRNA upstream 20499 2464444 ~ 2464698 (+) True G105887
TU119715 lncRNA downstream 611 2486228 ~ 2486430 (+) True G106006
TU119724 lncRNA downstream 29307 2514924 ~ 2536882 (+) True G106015
TU119732 lncRNA downstream 54340 2539957 ~ 2542574 (+) True G106023
TU119760 lncRNA downstream 64238 2549855 ~ 2550138 (+) True G106040
TU119765 lncRNA downstream 69095 2554712 ~ 2555100 (+) True G106045
XM_036961507.1 mRNA upstream 64576 2418186 ~ 2420621 (+) True LOC118944030
XM_036961504.1 mRNA upstream 307201 2166121 ~ 2177996 (+) True LOC118944029
XM_036935200.1 mRNA upstream 364742 2116553 ~ 2120455 (+) True LOC110516539
XM_036935178.1 mRNA upstream 583749 1865365 ~ 1901448 (+) False LOC110511503
XR_005034608.1 mRNA downstream 492619 2978236 ~ 2978524 (+) True LOC118937340
XR_005034604.1 mRNA downstream 493169 2978786 ~ 2980193 (+) False LOC118937337
XR_005034605.1 mRNA downstream 493196 2978813 ~ 2980193 (+) False LOC118937337
XR_005034606.1 mRNA downstream 493212 2978829 ~ 2980193 (+) False LOC118937337
XR_005034607.1 mRNA downstream 494286 2979903 ~ 2980193 (+) True LOC118937337
TU118283 other upstream 774640 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 784766 1699073 ~ 1700431 (+) True G105036
TU118057 other upstream 1132334 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 1331448 1153061 ~ 1153749 (+) True G104761
TU116939 other upstream 1612682 860506 ~ 872515 (+) True cmc1
TU119728 other downstream 35099 2520716 ~ 2527972 (+) True G106019
TU119854 other downstream 232344 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 489206 2974823 ~ 3039475 (+) True G106240
TU120034 other downstream 721180 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 881588 3367205 ~ 3425955 (+) False mboat1

Expression Profile