RNA id: TU119760


Basic Information

Item Value
RNA id TU119760
length 284
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G106040
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2549855 ~ 2550138 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtcacACAATAGACTAGGTTTTGATTCATATTATAACTGAAGGCTGAAACTCTACCAAACAGAGATACAATGCAtccaaaatggaaccctattccctatattatatcCACTATATTTGAACAGGACTCATaaggctctggtgaaaagtagttcactacatagggcatagggtgccgtACGAGACACAGTGACACAGTACATTGACGTAGTCCTTTTAAGTTTTAAAAGACTCTGATCGAATTGAAATGAGACACGACGCTATTTGAGGAgttggatttaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119732 lncRNA upstream 7281 2539957 ~ 2542574 (+) True G106023
TU119724 lncRNA upstream 12973 2514924 ~ 2536882 (+) True G106015
TU119715 lncRNA upstream 63425 2486228 ~ 2486430 (+) True G106006
TU119713 lncRNA upstream 64238 2485197 ~ 2485617 (+) True G106004
TU119711 lncRNA upstream 64709 2484797 ~ 2485146 (+) True G106002
TU119765 lncRNA downstream 4574 2554712 ~ 2555100 (+) True G106045
TU119773 lncRNA downstream 14152 2564290 ~ 2564535 (+) True G106053
TU119775 lncRNA downstream 15341 2565479 ~ 2565683 (+) True G106055
TU119776 lncRNA downstream 17924 2568062 ~ 2568266 (+) True G106056
TU119788 lncRNA downstream 28871 2579009 ~ 2579804 (+) True G106065
XM_036961507.1 mRNA upstream 129234 2418186 ~ 2420621 (+) True LOC118944030
XM_036961504.1 mRNA upstream 371859 2166121 ~ 2177996 (+) True LOC118944029
XM_036935200.1 mRNA upstream 429400 2116553 ~ 2120455 (+) True LOC110516539
XM_036935178.1 mRNA upstream 648407 1865365 ~ 1901448 (+) False LOC110511503
XR_005034608.1 mRNA downstream 428098 2978236 ~ 2978524 (+) True LOC118937340
XR_005034604.1 mRNA downstream 428648 2978786 ~ 2980193 (+) False LOC118937337
XR_005034605.1 mRNA downstream 428675 2978813 ~ 2980193 (+) False LOC118937337
XR_005034606.1 mRNA downstream 428691 2978829 ~ 2980193 (+) False LOC118937337
XR_005034607.1 mRNA downstream 429765 2979903 ~ 2980193 (+) True LOC118937337
TU119728 other upstream 21883 2520716 ~ 2527972 (+) True G106019
TU118283 other upstream 839298 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 849424 1699073 ~ 1700431 (+) True G105036
TU118057 other upstream 1196992 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 1396106 1153061 ~ 1153749 (+) True G104761
TU119854 other downstream 167823 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 424685 2974823 ~ 3039475 (+) True G106240
TU120034 other downstream 656659 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 817067 3367205 ~ 3425955 (+) False mboat1
TU120313 other downstream 817067 3367205 ~ 3487129 (+) False mboat1

Expression Profile