RNA id: TU119791


Basic Information

Item Value
RNA id TU119791
length 315
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G106068
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2582471 ~ 2582785 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCATAGCACCAACTGTAaagattggtggaggaggaataatggtctggtgctATTTTTCAAGGTTcgggcctcttagttccagtgaagggaaatctcaaCGCAACCGCAttcaattacattctagatgattctgtgcttccaactttgtggcaacagtttggggaaggccctttcctgtttcagcatgacgatgcccccgtgcacaaagcgaggtccatacagaaatggtttgtcgagatccgtgtggaagaacttgactggcctgcaaagtgccctgacctcaaccacatcgaagacctttgggatgaattggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119788 lncRNA upstream 2667 2579009 ~ 2579804 (+) True G106065
TU119776 lncRNA upstream 14205 2568062 ~ 2568266 (+) True G106056
TU119775 lncRNA upstream 16788 2565479 ~ 2565683 (+) True G106055
TU119773 lncRNA upstream 17936 2564290 ~ 2564535 (+) True G106053
TU119765 lncRNA upstream 27371 2554712 ~ 2555100 (+) True G106045
TU119792 lncRNA downstream 4787 2587572 ~ 2588446 (+) False G106069
TU119793 lncRNA downstream 4787 2587572 ~ 2588898 (+) True G106069
TU119794 lncRNA downstream 7534 2590319 ~ 2590997 (+) True G106070
TU119805 lncRNA downstream 50130 2632915 ~ 2633276 (+) False G106080
TU119807 lncRNA downstream 50130 2632915 ~ 2633762 (+) True G106080
XM_036961507.1 mRNA upstream 161850 2418186 ~ 2420621 (+) True LOC118944030
XM_036961504.1 mRNA upstream 404475 2166121 ~ 2177996 (+) True LOC118944029
XM_036935200.1 mRNA upstream 462016 2116553 ~ 2120455 (+) True LOC110516539
XM_036935178.1 mRNA upstream 681023 1865365 ~ 1901448 (+) False LOC110511503
XR_005034608.1 mRNA downstream 395451 2978236 ~ 2978524 (+) True LOC118937340
XR_005034604.1 mRNA downstream 396001 2978786 ~ 2980193 (+) False LOC118937337
XR_005034605.1 mRNA downstream 396028 2978813 ~ 2980193 (+) False LOC118937337
XR_005034606.1 mRNA downstream 396044 2978829 ~ 2980193 (+) False LOC118937337
XR_005034607.1 mRNA downstream 397118 2979903 ~ 2980193 (+) True LOC118937337
TU119728 other upstream 54499 2520716 ~ 2527972 (+) True G106019
TU118283 other upstream 871914 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 882040 1699073 ~ 1700431 (+) True G105036
TU118057 other upstream 1229608 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 1428722 1153061 ~ 1153749 (+) True G104761
TU119854 other downstream 135176 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 392038 2974823 ~ 3039475 (+) True G106240
TU120034 other downstream 624012 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 784420 3367205 ~ 3425955 (+) False mboat1
TU120313 other downstream 784420 3367205 ~ 3487129 (+) False mboat1

Expression Profile