RNA id: TU119794


Basic Information

Item Value
RNA id TU119794
length 380
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G106070
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2590319 ~ 2590997 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGCCTGTTTACACACCTGCATCAGGTAAGTCTGAAAGCCTGCAAAGCCTGTTTACACTCCTGCATCAGGTAAGTCTGAAAGCCTGCAAAGCCTGTTTACACACCTGCATCAGGTAAGTCTGAAAGCCTGCAAAGCCTGTTTACACACCTGCATCAGGTAAGTCTGAAAGCCTGCAAAGCCTGTTTACACACCTGTATCAGGTAAGTCTGAAAGCCTGCAAAGCCTGTTTACACACCTGCATCAGGTAAGTCTGAAAGCCTGTTTACACACCTGCATCAGGTAAGTCTGAAAGCCTGCAAAGCCTGTTTACACACCTGCATCAGGTAAGTCTGAAAGCCTGCAAAGCCTGTTTACACACCTGCAtcaggtaagtctgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119793 lncRNA upstream 1421 2587572 ~ 2588898 (+) True G106069
TU119792 lncRNA upstream 1873 2587572 ~ 2588446 (+) False G106069
TU119791 lncRNA upstream 7534 2582471 ~ 2582785 (+) True G106068
TU119788 lncRNA upstream 10515 2579009 ~ 2579804 (+) True G106065
TU119776 lncRNA upstream 22053 2568062 ~ 2568266 (+) True G106056
TU119805 lncRNA downstream 41918 2632915 ~ 2633276 (+) False G106080
TU119807 lncRNA downstream 41918 2632915 ~ 2633762 (+) True G106080
TU119778 lncRNA downstream 53905 2644902 ~ 2646178 (+) True G106057
TU119836 lncRNA downstream 90936 2681933 ~ 2682287 (+) True G106107
TU119850 lncRNA downstream 124055 2715052 ~ 2715404 (+) True G106120
XM_036961507.1 mRNA upstream 169698 2418186 ~ 2420621 (+) True LOC118944030
XM_036961504.1 mRNA upstream 412323 2166121 ~ 2177996 (+) True LOC118944029
XM_036935200.1 mRNA upstream 469864 2116553 ~ 2120455 (+) True LOC110516539
XM_036935178.1 mRNA upstream 688871 1865365 ~ 1901448 (+) False LOC110511503
XR_005034608.1 mRNA downstream 387239 2978236 ~ 2978524 (+) True LOC118937340
XR_005034604.1 mRNA downstream 387789 2978786 ~ 2980193 (+) False LOC118937337
XR_005034605.1 mRNA downstream 387816 2978813 ~ 2980193 (+) False LOC118937337
XR_005034606.1 mRNA downstream 387832 2978829 ~ 2980193 (+) False LOC118937337
XR_005034607.1 mRNA downstream 388906 2979903 ~ 2980193 (+) True LOC118937337
TU119728 other upstream 62347 2520716 ~ 2527972 (+) True G106019
TU118283 other upstream 879762 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 889888 1699073 ~ 1700431 (+) True G105036
TU118057 other upstream 1237456 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 1436570 1153061 ~ 1153749 (+) True G104761
TU119854 other downstream 126964 2717961 ~ 2718525 (+) True G106122
TU120020 other downstream 383826 2974823 ~ 3039475 (+) True G106240
TU120034 other downstream 615800 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 776208 3367205 ~ 3425955 (+) False mboat1
TU120313 other downstream 776208 3367205 ~ 3487129 (+) False mboat1

Expression Profile