RNA id: TU119854


Basic Information

Item Value
RNA id TU119854
length 415
RNA type TUCP
GC content 0.43
exon number 2
gene id G106122
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2717961 ~ 2718525 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGATTGTACAGTCCTGAACATGACTCCTGTTGATTGTACAGTCCTGAACATGACTCCTGTTGATTGTACAGTCCTGAACATGACTCCTGTTGATTGTACAGTCCTGAACATGACTCCTGTTGATTGTACAGTCCTGAACATGACTCCTGTTGATTGTACAGTCCTGAACATGACTCCTGTTGATTGTACAGTCCTGAACATGACTCCTGTTGATTGTACAGTTCTGAACATGACTCCTGTTGATTGTACAGTCCTGAACATGACTCCTGTTGATTGTGTTACAGTCCTGAACATGACTCCTGTTGATTGTACAGTCCTGAACATGACTCCTGTTGATTGTACAGTCCTGAACATGACTCCTGTTGATTGTACAGTCCTGAACATGACTCCTGTTGATTGTACAGTCCTGAACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119850 lncRNA upstream 2557 2715052 ~ 2715404 (+) True G106120
TU119836 lncRNA upstream 35674 2681933 ~ 2682287 (+) True G106107
TU119778 lncRNA upstream 71783 2644902 ~ 2646178 (+) True G106057
TU119807 lncRNA upstream 84199 2632915 ~ 2633762 (+) True G106080
TU119805 lncRNA upstream 84685 2632915 ~ 2633276 (+) False G106080
TU119857 lncRNA downstream 2528 2721053 ~ 2722361 (+) True G106124
TU119880 lncRNA downstream 37483 2756008 ~ 2756799 (+) False G106143
TU119881 lncRNA downstream 37791 2756316 ~ 2756799 (+) False G106143
TU119882 lncRNA downstream 37791 2756316 ~ 2756666 (+) True G106143
TU119890 lncRNA downstream 51460 2769985 ~ 2770484 (+) True G106151
XM_036961507.1 mRNA upstream 297340 2418186 ~ 2420621 (+) True LOC118944030
XM_036961504.1 mRNA upstream 539965 2166121 ~ 2177996 (+) True LOC118944029
XM_036935200.1 mRNA upstream 597506 2116553 ~ 2120455 (+) True LOC110516539
XM_036935178.1 mRNA upstream 816513 1865365 ~ 1901448 (+) False LOC110511503
XR_005034608.1 mRNA downstream 259711 2978236 ~ 2978524 (+) True LOC118937340
XR_005034604.1 mRNA downstream 260261 2978786 ~ 2980193 (+) False LOC118937337
XR_005034605.1 mRNA downstream 260288 2978813 ~ 2980193 (+) False LOC118937337
XR_005034606.1 mRNA downstream 260304 2978829 ~ 2980193 (+) False LOC118937337
XR_005034607.1 mRNA downstream 261378 2979903 ~ 2980193 (+) True LOC118937337
TU119728 other upstream 189989 2520716 ~ 2527972 (+) True G106019
TU118283 other upstream 1007404 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 1017530 1699073 ~ 1700431 (+) True G105036
TU118057 other upstream 1365098 1309278 ~ 1352863 (+) True tgfbr2b
TU117843 other upstream 1564212 1153061 ~ 1153749 (+) True G104761
TU120020 other downstream 256298 2974823 ~ 3039475 (+) True G106240
TU120034 other downstream 488272 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 648680 3367205 ~ 3425955 (+) False mboat1
TU120313 other downstream 648680 3367205 ~ 3487129 (+) False mboat1
TU120329 other downstream 648680 3367205 ~ 3487129 (+) False mboat1

Expression Profile