RNA id: TU119880


Basic Information

Item Value
RNA id TU119880
length 310
lncRNA type intronic
GC content 0.30
exon number 3
gene id G106143
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2756008 ~ 2756799 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctctctctctctctctctctctctgtctctctctgtctctctctctgtctgtctctctctgtctctctctctgtctgtctctctctctgtctctctctctgtctctctctctgtctctctctctgtctgtctctctctctgtctgtctctctctctgtctgtctctctctctgtctctctctctctgtctgtctctctctctgtctctctctctgtctctctctctgtctgtctctctctctgtctgtctctctctctgtctgtctctctctctgtctctctctctctgtctgtctgtctctctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119857 lncRNA upstream 33647 2721053 ~ 2722361 (+) True G106124
TU119850 lncRNA upstream 40604 2715052 ~ 2715404 (+) True G106120
TU119836 lncRNA upstream 73721 2681933 ~ 2682287 (+) True G106107
TU119778 lncRNA upstream 109830 2644902 ~ 2646178 (+) True G106057
TU119807 lncRNA upstream 122246 2632915 ~ 2633762 (+) True G106080
TU119890 lncRNA downstream 13186 2769985 ~ 2770484 (+) True G106151
TU119891 lncRNA downstream 14927 2771726 ~ 2772614 (+) True G106152
TU119904 lncRNA downstream 28814 2785613 ~ 2785963 (+) True G106164
TU119910 lncRNA downstream 55032 2811831 ~ 2812589 (+) True G106170
TU119939 lncRNA downstream 115523 2872322 ~ 2872918 (+) True G106194
XM_036961507.1 mRNA upstream 335387 2418186 ~ 2420621 (+) True LOC118944030
XM_036961504.1 mRNA upstream 578012 2166121 ~ 2177996 (+) True LOC118944029
XM_036935200.1 mRNA upstream 635553 2116553 ~ 2120455 (+) True LOC110516539
XM_036935178.1 mRNA upstream 854560 1865365 ~ 1901448 (+) False LOC110511503
XR_005034608.1 mRNA downstream 221437 2978236 ~ 2978524 (+) True LOC118937340
XR_005034604.1 mRNA downstream 221987 2978786 ~ 2980193 (+) False LOC118937337
XR_005034605.1 mRNA downstream 222014 2978813 ~ 2980193 (+) False LOC118937337
XR_005034606.1 mRNA downstream 222030 2978829 ~ 2980193 (+) False LOC118937337
XR_005034607.1 mRNA downstream 223104 2979903 ~ 2980193 (+) True LOC118937337
TU119854 other upstream 37483 2717961 ~ 2718525 (+) True G106122
TU119728 other upstream 228036 2520716 ~ 2527972 (+) True G106019
TU118283 other upstream 1045451 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 1055577 1699073 ~ 1700431 (+) True G105036
TU118057 other upstream 1403145 1309278 ~ 1352863 (+) True tgfbr2b
TU120020 other downstream 218024 2974823 ~ 3039475 (+) True G106240
TU120034 other downstream 449998 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 610406 3367205 ~ 3425955 (+) False mboat1
TU120313 other downstream 610406 3367205 ~ 3487129 (+) False mboat1
TU120329 other downstream 610406 3367205 ~ 3487129 (+) False mboat1

Expression Profile