RNA id: TU120027


Basic Information

Item Value
RNA id TU120027
length 561
lncRNA type intronic
GC content 0.39
exon number 4
gene id G106247
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2988147 ~ 2989181 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttctcagtcaggttgacactggtctactaccaggtcatgtgtcttctcagtcaggttgacactggtctactaccaggtcatgtgtcttctcagtcaggttgacactggtctactaccaggtcatgtgtcttctcagtcaggttgacactggtctactaccaggtcatgtgtcttctcagtcaggttgacactggtctactaccaggtcatgtgtcttctcagtcatgttgacactggtctactaccaggtcatgtgtcttctcagtcatgttgacactggtctactaccaggtcatgtgtcttctcagtcatgttgacactggtctactaccaggtcatgtgtcttctcagtcatgttgacactggtatactaccaggtcatgtgtcttctcagtcaggttgacactggtctactaccaggtcatgtgtcttctcagtcatgttgacactggtctactaccaggtcatgtgtcttctcagtcatgttgacactggtctactaccaggccATGTGTCTTCTCTGTCAGGTTGACACCTCATCTACTACACAAACAATATGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120023 lncRNA upstream 7813 2979396 ~ 2980334 (+) True G106243
TU120017 lncRNA upstream 16568 2970334 ~ 2971579 (+) False G106238
TU120016 lncRNA upstream 16568 2970853 ~ 2971579 (+) True G106238
TU120004 lncRNA upstream 38443 2947549 ~ 2949704 (+) True G106229
TU119998 lncRNA upstream 46594 2941146 ~ 2941553 (+) True G106224
TU120032 lncRNA downstream 15883 3005064 ~ 3005325 (+) True G106252
TU120033 lncRNA downstream 17131 3006312 ~ 3127725 (+) False G106253
TU120046 lncRNA downstream 35952 3025133 ~ 3025905 (+) True G106260
TU120049 lncRNA downstream 51075 3040256 ~ 3046547 (+) False G106263
TU120053 lncRNA downstream 51075 3040256 ~ 3043013 (+) False G106263
XR_005034604.1 mRNA upstream 7954 2978786 ~ 2980193 (+) False LOC118937337
XR_005034605.1 mRNA upstream 7954 2978813 ~ 2980193 (+) False LOC118937337
XR_005034606.1 mRNA upstream 7954 2978829 ~ 2980193 (+) False LOC118937337
XR_005034607.1 mRNA upstream 7954 2979903 ~ 2980193 (+) True LOC118937337
XR_005034608.1 mRNA upstream 9623 2978236 ~ 2978524 (+) True LOC118937340
XM_036935245.1 mRNA downstream 418006 3407187 ~ 3422099 (+) False mboat1
XM_036935236.1 mRNA downstream 418009 3407190 ~ 3422099 (+) False mboat1
XM_036935433.1 mRNA downstream 1061602 4050783 ~ 4065607 (+) True colec10
XM_036935438.1 mRNA downstream 1076811 4065992 ~ 4085680 (+) True mal2
XM_036935442.1 mRNA downstream 1123941 4113122 ~ 4119742 (+) True LOC110507036
TU119854 other upstream 269622 2717961 ~ 2718525 (+) True G106122
TU119728 other upstream 460175 2520716 ~ 2527972 (+) True G106019
TU118283 other upstream 1277590 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 1287716 1699073 ~ 1700431 (+) True G105036
TU118057 other upstream 1635284 1309278 ~ 1352863 (+) True tgfbr2b
TU120034 other downstream 217616 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 378024 3367205 ~ 3425955 (+) False mboat1
TU120313 other downstream 378024 3367205 ~ 3487129 (+) False mboat1
TU120329 other downstream 378024 3367205 ~ 3487129 (+) False mboat1
TU120569 other downstream 650253 3639434 ~ 3800352 (+) True G106575

Expression Profile