RNA id: TU120059


Basic Information

Item Value
RNA id TU120059
length 350
lncRNA type intronic
GC content 0.37
exon number 2
gene id G106267
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3057011 ~ 3057663 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTAGAGGGAAGCTATGAGCTATGTCACATAGATATACAACAACTAGAACAGTTAGAGGGAAGCTATGAGCTACGTCACATAGATATACAACAACTAGAACAGTTAGAGGGAAGCTATGTCACATAGATATACAACATAGAACAGTTAGAGGGAAGCTATGAGCTATGTCACATAGATAAACAACATAGAACAGTTAGAGGGAAGCTATATCACATAGATATACAACATAGAACAGTCAGAGGGAAGCTATGAGCTATGTCACATAGATAAACAACATAGAACAGTTAGAGGGAAGCTATGAGCTATATCACATAGATATACAACATAGAACAGTTAGAGGCTGGGGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120049 lncRNA upstream 10464 3040256 ~ 3046547 (+) False G106263
TU120052 lncRNA upstream 10464 3044589 ~ 3046547 (+) True G106263
TU120054 lncRNA upstream 13424 3040256 ~ 3043587 (+) False G106263
TU120053 lncRNA upstream 13998 3040256 ~ 3043013 (+) False G106263
TU120046 lncRNA upstream 31106 3025133 ~ 3025905 (+) True G106260
TU120061 lncRNA downstream 485 3058148 ~ 3058788 (+) True G106269
TU120069 lncRNA downstream 9991 3067654 ~ 3068028 (+) True G106277
TU120076 lncRNA downstream 21437 3079100 ~ 3081508 (+) True G106284
TU120079 lncRNA downstream 21900 3079563 ~ 3082325 (+) True G106285
TU120087 lncRNA downstream 33226 3090889 ~ 3106707 (+) False G106291
XR_005034604.1 mRNA upstream 76818 2978786 ~ 2980193 (+) False LOC118937337
XR_005034605.1 mRNA upstream 76818 2978813 ~ 2980193 (+) False LOC118937337
XR_005034606.1 mRNA upstream 76818 2978829 ~ 2980193 (+) False LOC118937337
XR_005034607.1 mRNA upstream 76818 2979903 ~ 2980193 (+) True LOC118937337
XR_005034608.1 mRNA upstream 78487 2978236 ~ 2978524 (+) True LOC118937340
XM_036935245.1 mRNA downstream 349524 3407187 ~ 3422099 (+) False mboat1
XM_036935236.1 mRNA downstream 349527 3407190 ~ 3422099 (+) False mboat1
XM_036935433.1 mRNA downstream 993120 4050783 ~ 4065607 (+) True colec10
XM_036935438.1 mRNA downstream 1008329 4065992 ~ 4085680 (+) True mal2
XM_036935442.1 mRNA downstream 1055459 4113122 ~ 4119742 (+) True LOC110507036
TU120020 other upstream 17536 2974823 ~ 3039475 (+) True G106240
TU119854 other upstream 338486 2717961 ~ 2718525 (+) True G106122
TU119728 other upstream 529039 2520716 ~ 2527972 (+) True G106019
TU118283 other upstream 1346454 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 1356580 1699073 ~ 1700431 (+) True G105036
TU120034 other downstream 149134 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 309542 3367205 ~ 3425955 (+) False mboat1
TU120313 other downstream 309542 3367205 ~ 3487129 (+) False mboat1
TU120329 other downstream 309542 3367205 ~ 3487129 (+) False mboat1
TU120569 other downstream 581771 3639434 ~ 3800352 (+) True G106575

Expression Profile