RNA id: TU120069


Basic Information

Item Value
RNA id TU120069
length 243
lncRNA type intronic
GC content 0.50
exon number 2
gene id G106277
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3067654 ~ 3068028 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCTGACAGAGTGAACAGTATTACTGGGAGAAACAGCATCTCTACTGCCCTGATCGCTTTCTCAAGGCAAAAAACCAACTACGACTTCTCCAGGAATACACAGTGAGGGACTGTGGGCTTCTCCAGGAATACACAGTGAGGGACTGTGGGCTTCTCCAGGAATACACAGTGAGGGACTGTGGGCTTCTCCAGGAATACACAATGAGGGACTGTAGGCTTCTCCAGGAATACACAGTGAGGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120061 lncRNA upstream 8866 3058148 ~ 3058788 (+) True G106269
TU120059 lncRNA upstream 9991 3057011 ~ 3057663 (+) True G106267
TU120049 lncRNA upstream 21107 3040256 ~ 3046547 (+) False G106263
TU120052 lncRNA upstream 21107 3044589 ~ 3046547 (+) True G106263
TU120054 lncRNA upstream 24067 3040256 ~ 3043587 (+) False G106263
TU120076 lncRNA downstream 11072 3079100 ~ 3081508 (+) True G106284
TU120079 lncRNA downstream 11535 3079563 ~ 3082325 (+) True G106285
TU120087 lncRNA downstream 22861 3090889 ~ 3106707 (+) False G106291
TU120094 lncRNA downstream 26394 3094422 ~ 3100240 (+) False G106295
TU120096 lncRNA downstream 26827 3094855 ~ 3096761 (+) True G106296
XR_005034604.1 mRNA upstream 87461 2978786 ~ 2980193 (+) False LOC118937337
XR_005034605.1 mRNA upstream 87461 2978813 ~ 2980193 (+) False LOC118937337
XR_005034606.1 mRNA upstream 87461 2978829 ~ 2980193 (+) False LOC118937337
XR_005034607.1 mRNA upstream 87461 2979903 ~ 2980193 (+) True LOC118937337
XR_005034608.1 mRNA upstream 89130 2978236 ~ 2978524 (+) True LOC118937340
XM_036935245.1 mRNA downstream 339159 3407187 ~ 3422099 (+) False mboat1
XM_036935236.1 mRNA downstream 339162 3407190 ~ 3422099 (+) False mboat1
XM_036935433.1 mRNA downstream 982755 4050783 ~ 4065607 (+) True colec10
XM_036935438.1 mRNA downstream 997964 4065992 ~ 4085680 (+) True mal2
XM_036935442.1 mRNA downstream 1045094 4113122 ~ 4119742 (+) True LOC110507036
TU120020 other upstream 28179 2974823 ~ 3039475 (+) True G106240
TU119854 other upstream 349129 2717961 ~ 2718525 (+) True G106122
TU119728 other upstream 539682 2520716 ~ 2527972 (+) True G106019
TU118283 other upstream 1357097 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 1367223 1699073 ~ 1700431 (+) True G105036
TU120034 other downstream 138769 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 299177 3367205 ~ 3425955 (+) False mboat1
TU120313 other downstream 299177 3367205 ~ 3487129 (+) False mboat1
TU120329 other downstream 299177 3367205 ~ 3487129 (+) False mboat1
TU120569 other downstream 571406 3639434 ~ 3800352 (+) True G106575

Expression Profile