RNA id: TU120079


Basic Information

Item Value
RNA id TU120079
length 599
lncRNA type intronic
GC content 0.38
exon number 2
gene id G106285
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3079563 ~ 3082325 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgataaatatcacctctacagacgacactgataaatatcacctctacagacgacactgataaatatcacctctacagatGacgctgataaatatcacctctacagacgacactgataaatatcacctctacagacgactctgataaatatcacctctacagacgacactgataaatatcgcctctacagacgactctgataaatatcacctctacagacgacactgataaatatcacctctacagacgacgccTCTACAGAAATCGCCTCTACAGACGacgctgataaatatcacctctacagacgactctgataaatatcacctctacagacgactctgATACAGaaatcacctctacagacgacactgataaatatcacctctacagacgacactgataaatatcgcctctacagacgacactgataaatatcgccTCTACAGACGACTCTGATACAGAAATCGCCTCTACAGACGACTCTGATAAATATCGCCTCTACAGACGACGCTGATACAGAAatcgcctctacagacgacactgataaatatcgccTCTACAGACGACTCTGATACAGAAATCGCCTCTACAGACGACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120069 lncRNA upstream 11535 3067654 ~ 3068028 (+) True G106277
TU120061 lncRNA upstream 20775 3058148 ~ 3058788 (+) True G106269
TU120059 lncRNA upstream 21900 3057011 ~ 3057663 (+) True G106267
TU120049 lncRNA upstream 33016 3040256 ~ 3046547 (+) False G106263
TU120052 lncRNA upstream 33016 3044589 ~ 3046547 (+) True G106263
TU120087 lncRNA downstream 8564 3090889 ~ 3106707 (+) False G106291
TU120094 lncRNA downstream 12097 3094422 ~ 3100240 (+) False G106295
TU120096 lncRNA downstream 12530 3094855 ~ 3096761 (+) True G106296
TU120093 lncRNA downstream 17675 3100000 ~ 3101889 (+) True G106295
TU120086 lncRNA downstream 22798 3105123 ~ 3106707 (+) False G106291
XR_005034604.1 mRNA upstream 99370 2978786 ~ 2980193 (+) False LOC118937337
XR_005034605.1 mRNA upstream 99370 2978813 ~ 2980193 (+) False LOC118937337
XR_005034606.1 mRNA upstream 99370 2978829 ~ 2980193 (+) False LOC118937337
XR_005034607.1 mRNA upstream 99370 2979903 ~ 2980193 (+) True LOC118937337
XR_005034608.1 mRNA upstream 101039 2978236 ~ 2978524 (+) True LOC118937340
XM_036935245.1 mRNA downstream 324862 3407187 ~ 3422099 (+) False mboat1
XM_036935236.1 mRNA downstream 324865 3407190 ~ 3422099 (+) False mboat1
XM_036935433.1 mRNA downstream 968458 4050783 ~ 4065607 (+) True colec10
XM_036935438.1 mRNA downstream 983667 4065992 ~ 4085680 (+) True mal2
XM_036935442.1 mRNA downstream 1030797 4113122 ~ 4119742 (+) True LOC110507036
TU120020 other upstream 40088 2974823 ~ 3039475 (+) True G106240
TU119854 other upstream 361038 2717961 ~ 2718525 (+) True G106122
TU119728 other upstream 551591 2520716 ~ 2527972 (+) True G106019
TU118283 other upstream 1369006 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 1379132 1699073 ~ 1700431 (+) True G105036
TU120034 other downstream 124472 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 284880 3367205 ~ 3425955 (+) False mboat1
TU120313 other downstream 284880 3367205 ~ 3487129 (+) False mboat1
TU120329 other downstream 284880 3367205 ~ 3487129 (+) False mboat1
TU120569 other downstream 557109 3639434 ~ 3800352 (+) True G106575

Expression Profile