RNA id: TU120089


Basic Information

Item Value
RNA id TU120089
length 242
lncRNA type intronic
GC content 0.46
exon number 2
gene id G106291
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3090889 ~ 3106707 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaggagagagagccagaggtatagagaggagagaaagagaggagagaaagagaggagagaaagccagaggtatagagaggagagagagcggtgtATTGGGACCCCTGATGGTACAGTCATCCATAAAGAACACTTCTACTGAAGAGAAATGCAACATGTGATCAGTGTTTTGCTGGTCAGAGTATTTTCTGAATCCTCACCGTGTCGGACCAAGATGAACAGAATGAAAACacagagcgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120093 lncRNA upstream 4421 3100000 ~ 3101889 (+) True G106295
TU120094 lncRNA upstream 6070 3094422 ~ 3100240 (+) False G106295
TU120096 lncRNA upstream 9549 3094855 ~ 3096761 (+) True G106296
TU120079 lncRNA upstream 23985 3079563 ~ 3082325 (+) True G106285
TU120076 lncRNA upstream 24802 3079100 ~ 3081508 (+) True G106284
TU120103 lncRNA downstream 6281 3112988 ~ 3113743 (+) True G106301
TU120107 lncRNA downstream 14626 3121333 ~ 3122375 (+) True G106305
TU120111 lncRNA downstream 17568 3124275 ~ 3167091 (+) True G106309
TU120036 lncRNA downstream 20612 3127319 ~ 3209006 (+) False G106253
TU120124 lncRNA downstream 38082 3144789 ~ 3197116 (+) True G106322
XR_005034604.1 mRNA upstream 126117 2978786 ~ 2980193 (+) False LOC118937337
XR_005034605.1 mRNA upstream 126117 2978813 ~ 2980193 (+) False LOC118937337
XR_005034606.1 mRNA upstream 126117 2978829 ~ 2980193 (+) False LOC118937337
XR_005034607.1 mRNA upstream 126117 2979903 ~ 2980193 (+) True LOC118937337
XR_005034608.1 mRNA upstream 127786 2978236 ~ 2978524 (+) True LOC118937340
XM_036935245.1 mRNA downstream 300480 3407187 ~ 3422099 (+) False mboat1
XM_036935236.1 mRNA downstream 300483 3407190 ~ 3422099 (+) False mboat1
XM_036935433.1 mRNA downstream 944076 4050783 ~ 4065607 (+) True colec10
XM_036935438.1 mRNA downstream 959285 4065992 ~ 4085680 (+) True mal2
XM_036935442.1 mRNA downstream 1006415 4113122 ~ 4119742 (+) True LOC110507036
TU120020 other upstream 66835 2974823 ~ 3039475 (+) True G106240
TU119854 other upstream 387785 2717961 ~ 2718525 (+) True G106122
TU119728 other upstream 578338 2520716 ~ 2527972 (+) True G106019
TU118283 other upstream 1395753 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 1405879 1699073 ~ 1700431 (+) True G105036
TU120034 other downstream 100090 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 260498 3367205 ~ 3425955 (+) False mboat1
TU120313 other downstream 260498 3367205 ~ 3487129 (+) False mboat1
TU120329 other downstream 260498 3367205 ~ 3487129 (+) False mboat1
TU120569 other downstream 532727 3639434 ~ 3800352 (+) True G106575

Expression Profile