RNA id: TU120094


Basic Information

Item Value
RNA id TU120094
length 446
lncRNA type intronic
GC content 0.47
exon number 2
gene id G106295
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3094422 ~ 3101889 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accactactagaggacacacacatcacagtcatctatactgggacaccacgactagaggacacacacatcacagccatctatactgggacaccactactagaggacacacacatcacagccatctatactgggacaccactactagaggacacacacatcacagtcatctatactgggacaccacgaCTAGAGGATACACACATAACAtccatctatactgggacaccactactagaggacacacacatcacagccatctatactgggacaccactactagaggacacacacatcacagtcatctatactgggacaccacgaCTAGAGGATACACACacacataacagccatctatactgggacaccacgactagaggacacacacatcacagtcatctatactgggacaccactactagaggacacacatcacagtcatctatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120079 lncRNA upstream 12097 3079563 ~ 3082325 (+) True G106285
TU120076 lncRNA upstream 12914 3079100 ~ 3081508 (+) True G106284
TU120069 lncRNA upstream 26394 3067654 ~ 3068028 (+) True G106277
TU120061 lncRNA upstream 35634 3058148 ~ 3058788 (+) True G106269
TU120059 lncRNA upstream 36759 3057011 ~ 3057663 (+) True G106267
TU120086 lncRNA downstream 4883 3105123 ~ 3106707 (+) False G106291
TU120089 lncRNA downstream 6070 3106310 ~ 3106707 (+) True G106291
TU120103 lncRNA downstream 12748 3112988 ~ 3113743 (+) True G106301
TU120107 lncRNA downstream 21093 3121333 ~ 3122375 (+) True G106305
TU120111 lncRNA downstream 24035 3124275 ~ 3167091 (+) True G106309
XR_005034604.1 mRNA upstream 114229 2978786 ~ 2980193 (+) False LOC118937337
XR_005034605.1 mRNA upstream 114229 2978813 ~ 2980193 (+) False LOC118937337
XR_005034606.1 mRNA upstream 114229 2978829 ~ 2980193 (+) False LOC118937337
XR_005034607.1 mRNA upstream 114229 2979903 ~ 2980193 (+) True LOC118937337
XR_005034608.1 mRNA upstream 115898 2978236 ~ 2978524 (+) True LOC118937340
XM_036935245.1 mRNA downstream 306947 3407187 ~ 3422099 (+) False mboat1
XM_036935236.1 mRNA downstream 306950 3407190 ~ 3422099 (+) False mboat1
XM_036935433.1 mRNA downstream 950543 4050783 ~ 4065607 (+) True colec10
XM_036935438.1 mRNA downstream 965752 4065992 ~ 4085680 (+) True mal2
XM_036935442.1 mRNA downstream 1012882 4113122 ~ 4119742 (+) True LOC110507036
TU120020 other upstream 54947 2974823 ~ 3039475 (+) True G106240
TU119854 other upstream 375897 2717961 ~ 2718525 (+) True G106122
TU119728 other upstream 566450 2520716 ~ 2527972 (+) True G106019
TU118283 other upstream 1383865 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 1393991 1699073 ~ 1700431 (+) True G105036
TU120034 other downstream 106557 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 266965 3367205 ~ 3425955 (+) False mboat1
TU120313 other downstream 266965 3367205 ~ 3487129 (+) False mboat1
TU120329 other downstream 266965 3367205 ~ 3487129 (+) False mboat1
TU120569 other downstream 539194 3639434 ~ 3800352 (+) True G106575

Expression Profile