RNA id: TU120111


Basic Information

Item Value
RNA id TU120111
length 237
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G106309
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3124275 ~ 3167091 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagagatgagagaacaaCGAACAGCGTTTAAcagctttaaaaaataaataaaaatcacgTATGAATTCATCTTCATCGTGGACTCGGATGTCAGAAGGCCTCAGGGAGACAGTTATGCTTTTTCCATTTAGTAATAGCGATGCCAAACGCCTGGTATTATGTGATAAACCACAAGTATTAGTCTACACTGTAATACTGCACTATACCTGAGGTAAAAACACACAAAAACACACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120107 lncRNA upstream 1900 3121333 ~ 3122375 (+) True G106305
TU120103 lncRNA upstream 10532 3112988 ~ 3113743 (+) True G106301
TU120087 lncRNA upstream 17568 3090889 ~ 3106707 (+) False G106291
TU120086 lncRNA upstream 17568 3105123 ~ 3106707 (+) False G106291
TU120089 lncRNA upstream 17568 3106310 ~ 3106707 (+) True G106291
TU120163 lncRNA downstream 35514 3202605 ~ 3266098 (+) True G106351
TU120184 lncRNA downstream 75266 3242357 ~ 3242931 (+) False G106368
TU120187 lncRNA downstream 75266 3242357 ~ 3242931 (+) False G106368
TU120188 lncRNA downstream 75266 3242357 ~ 3242931 (+) True G106368
TU120192 lncRNA downstream 79318 3246409 ~ 3246714 (+) True G106371
XR_005034604.1 mRNA upstream 144082 2978786 ~ 2980193 (+) False LOC118937337
XR_005034605.1 mRNA upstream 144082 2978813 ~ 2980193 (+) False LOC118937337
XR_005034606.1 mRNA upstream 144082 2978829 ~ 2980193 (+) False LOC118937337
XR_005034607.1 mRNA upstream 144082 2979903 ~ 2980193 (+) True LOC118937337
XR_005034608.1 mRNA upstream 145751 2978236 ~ 2978524 (+) True LOC118937340
XM_036935245.1 mRNA downstream 240096 3407187 ~ 3422099 (+) False mboat1
XM_036935236.1 mRNA downstream 240099 3407190 ~ 3422099 (+) False mboat1
XM_036935433.1 mRNA downstream 883692 4050783 ~ 4065607 (+) True colec10
XM_036935438.1 mRNA downstream 898901 4065992 ~ 4085680 (+) True mal2
XM_036935442.1 mRNA downstream 946031 4113122 ~ 4119742 (+) True LOC110507036
TU120020 other upstream 84800 2974823 ~ 3039475 (+) True G106240
TU119854 other upstream 405750 2717961 ~ 2718525 (+) True G106122
TU119728 other upstream 596303 2520716 ~ 2527972 (+) True G106019
TU118283 other upstream 1413718 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 1423844 1699073 ~ 1700431 (+) True G105036
TU120034 other downstream 39706 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 200114 3367205 ~ 3425955 (+) False mboat1
TU120313 other downstream 200114 3367205 ~ 3487129 (+) False mboat1
TU120329 other downstream 200114 3367205 ~ 3487129 (+) False mboat1
TU120569 other downstream 472343 3639434 ~ 3800352 (+) True G106575

Expression Profile