RNA id: TU120127


Basic Information

Item Value
RNA id TU120127
length 535
lncRNA type intronic
GC content 0.38
exon number 2
gene id G106325
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3147360 ~ 3148142 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATACCACATAATAATACGGTCCTAAGAGTACATTATGGCTGGGCCAGAATTAGAACAGGGCAGACCATCAGAATCCATCACTAATGATGGAGTAGTACCCCGCAGTCACTGGCTGGCTccgtcccaaatcacacccctaTTCCCTACGCAGCGCACTACTTTCCACCAGATAAGTACAGTCTGGGAGTAGTAGCTCTACGTTAGAAGTAGTACACTCTCTATAGGGAATAAGGGAACCAATTGGGACGCATTTGGTTTCAGAGGTAAAAAATAAGGAATTGATTAAAAATAAATGTGGTACAGACGCTAATTGTTTCAGATAATAAACGCTGCGGCTATCTCCCAGTTATCACCGAAACAGACTGAATGCTCTCTGATGTTACTGATACAACTACTACTATCTCCCAGTTATCACCGAAACAGACTGAATGCTCTCTGATGTTACTGATACAACTACTACTATCTCCCAGTTATCACCGAAACAGACTGAATGCTCTCTGATGTTACTGCTTTTTAAAGctaactactaccacta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120033 lncRNA upstream 19635 3006312 ~ 3127725 (+) False G106253
TU120107 lncRNA upstream 24985 3121333 ~ 3122375 (+) True G106305
TU120103 lncRNA upstream 33617 3112988 ~ 3113743 (+) True G106301
TU120087 lncRNA upstream 40653 3090889 ~ 3106707 (+) False G106291
TU120086 lncRNA upstream 40653 3105123 ~ 3106707 (+) False G106291
TU120128 lncRNA downstream 2231 3150373 ~ 3150869 (+) True G106326
TU120138 lncRNA downstream 16088 3164230 ~ 3164774 (+) False G106333
TU120139 lncRNA downstream 16088 3164230 ~ 3164774 (+) False G106333
TU120140 lncRNA downstream 16088 3164230 ~ 3164774 (+) False G106333
TU120141 lncRNA downstream 16088 3164230 ~ 3164774 (+) True G106333
XR_005034604.1 mRNA upstream 167167 2978786 ~ 2980193 (+) False LOC118937337
XR_005034605.1 mRNA upstream 167167 2978813 ~ 2980193 (+) False LOC118937337
XR_005034606.1 mRNA upstream 167167 2978829 ~ 2980193 (+) False LOC118937337
XR_005034607.1 mRNA upstream 167167 2979903 ~ 2980193 (+) True LOC118937337
XR_005034608.1 mRNA upstream 168836 2978236 ~ 2978524 (+) True LOC118937340
XM_036935245.1 mRNA downstream 259045 3407187 ~ 3422099 (+) False mboat1
XM_036935236.1 mRNA downstream 259048 3407190 ~ 3422099 (+) False mboat1
XM_036935433.1 mRNA downstream 902641 4050783 ~ 4065607 (+) True colec10
XM_036935438.1 mRNA downstream 917850 4065992 ~ 4085680 (+) True mal2
XM_036935442.1 mRNA downstream 964980 4113122 ~ 4119742 (+) True LOC110507036
TU120020 other upstream 107885 2974823 ~ 3039475 (+) True G106240
TU119854 other upstream 428835 2717961 ~ 2718525 (+) True G106122
TU119728 other upstream 619388 2520716 ~ 2527972 (+) True G106019
TU118283 other upstream 1436803 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 1446929 1699073 ~ 1700431 (+) True G105036
TU120034 other downstream 58655 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 219063 3367205 ~ 3425955 (+) False mboat1
TU120313 other downstream 219063 3367205 ~ 3487129 (+) False mboat1
TU120329 other downstream 219063 3367205 ~ 3487129 (+) False mboat1
TU120569 other downstream 491292 3639434 ~ 3800352 (+) True G106575

Expression Profile