RNA id: TU120139


Basic Information

Item Value
RNA id TU120139
length 269
lncRNA type intronic
GC content 0.48
exon number 3
gene id G106333
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3164230 ~ 3164774 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTGAGATCTAACTGGACTGTCCAGGGTAGTGGGTGGATGTTGTGGAATGAGGTCTAACTGGACTGTCCAGGGTAGTGGGTGGATGTTGTGGAATGAGATCTAACTGGACTGTCCAGGGTAGTGGGATTATGTTGTGAAATGAGGTCTAACTGGACTGTCCAGGGTAGTGGGATTATGTTGTGGAACGAGATCTAACTAGACTGTCAAGGGTAGTGGGATTATGTTGTGGAATGAGATctcatgaggagaggagagagaggtgagagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120128 lncRNA upstream 13361 3150373 ~ 3150869 (+) True G106326
TU120127 lncRNA upstream 16088 3147360 ~ 3148142 (+) True G106325
TU120107 lncRNA upstream 41855 3121333 ~ 3122375 (+) True G106305
TU120103 lncRNA upstream 50487 3112988 ~ 3113743 (+) True G106301
TU120086 lncRNA upstream 57523 3105123 ~ 3106707 (+) False G106291
TU120163 lncRNA downstream 37831 3202605 ~ 3266098 (+) True G106351
TU120184 lncRNA downstream 77583 3242357 ~ 3242931 (+) False G106368
TU120187 lncRNA downstream 77583 3242357 ~ 3242931 (+) False G106368
TU120188 lncRNA downstream 77583 3242357 ~ 3242931 (+) True G106368
TU120192 lncRNA downstream 81635 3246409 ~ 3246714 (+) True G106371
XR_005034604.1 mRNA upstream 184037 2978786 ~ 2980193 (+) False LOC118937337
XR_005034605.1 mRNA upstream 184037 2978813 ~ 2980193 (+) False LOC118937337
XR_005034606.1 mRNA upstream 184037 2978829 ~ 2980193 (+) False LOC118937337
XR_005034607.1 mRNA upstream 184037 2979903 ~ 2980193 (+) True LOC118937337
XR_005034608.1 mRNA upstream 185706 2978236 ~ 2978524 (+) True LOC118937340
XM_036935245.1 mRNA downstream 242413 3407187 ~ 3422099 (+) False mboat1
XM_036935236.1 mRNA downstream 242416 3407190 ~ 3422099 (+) False mboat1
XM_036935433.1 mRNA downstream 886009 4050783 ~ 4065607 (+) True colec10
XM_036935438.1 mRNA downstream 901218 4065992 ~ 4085680 (+) True mal2
XM_036935442.1 mRNA downstream 948348 4113122 ~ 4119742 (+) True LOC110507036
TU120020 other upstream 124755 2974823 ~ 3039475 (+) True G106240
TU119854 other upstream 445705 2717961 ~ 2718525 (+) True G106122
TU119728 other upstream 636258 2520716 ~ 2527972 (+) True G106019
TU118283 other upstream 1453673 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 1463799 1699073 ~ 1700431 (+) True G105036
TU120034 other downstream 42023 3206797 ~ 3391033 (+) True G106253
TU120299 other downstream 202431 3367205 ~ 3425955 (+) False mboat1
TU120313 other downstream 202431 3367205 ~ 3487129 (+) False mboat1
TU120329 other downstream 202431 3367205 ~ 3487129 (+) False mboat1
TU120569 other downstream 474660 3639434 ~ 3800352 (+) True G106575

Expression Profile