RNA id: TU120163


Basic Information

Item Value
RNA id TU120163
length 284
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id G106351
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3202605 ~ 3266098 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAAACAATAAGCGAGGGAGAGagagagagagagagaggtctgtcctGTCTCGGTCTGTCCATTAGGAGGGAATGTTTAAATAGTTATAGTGTGACCCTACTATTGGGAGTCGCTGGTCACATGTTTCCACGCGACAGGAAATGGGCTGCCAAAACACAAGCACACAATAGACCACAGGACCTTTGACTGCAGCTGGGCTGAACTAACTGGGCCTCGGTCACAGTGGTTCTGGGGTTTCATATCAACAGAGTCCTGGCTATTATGGGTTATAATGTTGATGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120124 lncRNA upstream 5489 3144789 ~ 3197116 (+) True G106322
TU120111 lncRNA upstream 35514 3124275 ~ 3167091 (+) True G106309
TU120138 lncRNA upstream 37831 3164230 ~ 3164774 (+) False G106333
TU120139 lncRNA upstream 37831 3164230 ~ 3164774 (+) False G106333
TU120140 lncRNA upstream 37831 3164230 ~ 3164774 (+) False G106333
TU120210 lncRNA downstream 2534 3268632 ~ 3268878 (+) True G106388
TU120223 lncRNA downstream 18222 3284320 ~ 3285155 (+) True G106400
TU120301 lncRNA downstream 84484 3350582 ~ 3425955 (+) False mboat1
TU120260 lncRNA downstream 101107 3367205 ~ 3425998 (+) False mboat1
TU120272 lncRNA downstream 101107 3367205 ~ 3425998 (+) False mboat1
XR_005034604.1 mRNA upstream 222412 2978786 ~ 2980193 (+) False LOC118937337
XR_005034605.1 mRNA upstream 222412 2978813 ~ 2980193 (+) False LOC118937337
XR_005034606.1 mRNA upstream 222412 2978829 ~ 2980193 (+) False LOC118937337
XR_005034607.1 mRNA upstream 222412 2979903 ~ 2980193 (+) True LOC118937337
XR_005034608.1 mRNA upstream 224081 2978236 ~ 2978524 (+) True LOC118937340
XM_036935245.1 mRNA downstream 141089 3407187 ~ 3422099 (+) False mboat1
XM_036935236.1 mRNA downstream 141092 3407190 ~ 3422099 (+) False mboat1
XM_036935433.1 mRNA downstream 784685 4050783 ~ 4065607 (+) True colec10
XM_036935438.1 mRNA downstream 799894 4065992 ~ 4085680 (+) True mal2
XM_036935442.1 mRNA downstream 847024 4113122 ~ 4119742 (+) True LOC110507036
TU120020 other upstream 163130 2974823 ~ 3039475 (+) True G106240
TU119854 other upstream 484080 2717961 ~ 2718525 (+) True G106122
TU119728 other upstream 674633 2520716 ~ 2527972 (+) True G106019
TU118283 other upstream 1492048 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 1502174 1699073 ~ 1700431 (+) True G105036
TU120299 other downstream 101107 3367205 ~ 3425955 (+) False mboat1
TU120313 other downstream 101107 3367205 ~ 3487129 (+) False mboat1
TU120329 other downstream 101107 3367205 ~ 3487129 (+) False mboat1
TU120569 other downstream 373336 3639434 ~ 3800352 (+) True G106575
TU120618 other downstream 410167 3676265 ~ 3677850 (+) False G106595

Expression Profile