RNA id: TU120223


Basic Information

Item Value
RNA id TU120223
length 727
lncRNA type intronic
GC content 0.47
exon number 2
gene id G106400
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3284320 ~ 3285155 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGATAACAACACAACCACGGATAACAACACAACCACGGATAACAACACAACCACGGATAACAACACAACCACGGATAACAACACAACCACGGATAACAACACAACCATGGATAACAACACAACCATGGATAACAACACAACCATGGATAACAACACAACCACGGATAACAACACAACCATGGATAACAACACAACCATGGataacaacacacagaacaaaaccaCCATAGATAAGATGGTTGTATGACCTAAAACACACTTCCCTTTTCTCCCATTTTCTCTCTCACCCGATCACCATCTAACACATTAGCACAACCACACaacacatcatcacacacacacacacacctatgacCTCCTGCTCCCTGTCCCGGTCTTATCACCGAGGAGTCTGCCCCAGCAGCTCACGGTAAGATCAATGACCATATGGTGGAAGTGGCAGTTTAGAAGCAGGCGTTTGgaaccatgacacacacacacacacacacacacacaccaggagccTCAACATTCCCCTCTGGAGCCACTTCGTACTGCAGACGCCCAGGGCAGGCAGCCGCTCACTTCAATTAGGCTGGTAATTAGCAGCGCGGCCTAGCAGTGTGAATAAGCCGACCACTACCGTAGCAAGTGCTGGAACAAAAGATGCCCGGGCCTCAGAAATTACCATAGCATCTGAATCATtgatacattatattacattagcCCCTGGTGTGCTAATCTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120210 lncRNA upstream 15442 3268632 ~ 3268878 (+) True G106388
TU120163 lncRNA upstream 18222 3202605 ~ 3266098 (+) True G106351
TU120192 lncRNA upstream 37606 3246409 ~ 3246714 (+) True G106371
TU120184 lncRNA upstream 41389 3242357 ~ 3242931 (+) False G106368
TU120187 lncRNA upstream 41389 3242357 ~ 3242931 (+) False G106368
TU120301 lncRNA downstream 65427 3350582 ~ 3425955 (+) False mboat1
TU120260 lncRNA downstream 82050 3367205 ~ 3425998 (+) False mboat1
TU120272 lncRNA downstream 82050 3367205 ~ 3425998 (+) False mboat1
TU120319 lncRNA downstream 82050 3367205 ~ 3425998 (+) False mboat1
TU120334 lncRNA downstream 82050 3367205 ~ 3426531 (+) False mboat1
XR_005034604.1 mRNA upstream 304127 2978786 ~ 2980193 (+) False LOC118937337
XR_005034605.1 mRNA upstream 304127 2978813 ~ 2980193 (+) False LOC118937337
XR_005034606.1 mRNA upstream 304127 2978829 ~ 2980193 (+) False LOC118937337
XR_005034607.1 mRNA upstream 304127 2979903 ~ 2980193 (+) True LOC118937337
XR_005034608.1 mRNA upstream 305796 2978236 ~ 2978524 (+) True LOC118937340
XM_036935245.1 mRNA downstream 122032 3407187 ~ 3422099 (+) False mboat1
XM_036935236.1 mRNA downstream 122035 3407190 ~ 3422099 (+) False mboat1
XM_036935433.1 mRNA downstream 765628 4050783 ~ 4065607 (+) True colec10
XM_036935438.1 mRNA downstream 780837 4065992 ~ 4085680 (+) True mal2
XM_036935442.1 mRNA downstream 827967 4113122 ~ 4119742 (+) True LOC110507036
TU120020 other upstream 244845 2974823 ~ 3039475 (+) True G106240
TU119854 other upstream 565795 2717961 ~ 2718525 (+) True G106122
TU119728 other upstream 756348 2520716 ~ 2527972 (+) True G106019
TU118283 other upstream 1573763 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 1583889 1699073 ~ 1700431 (+) True G105036
TU120299 other downstream 82050 3367205 ~ 3425955 (+) False mboat1
TU120313 other downstream 82050 3367205 ~ 3487129 (+) False mboat1
TU120329 other downstream 82050 3367205 ~ 3487129 (+) False mboat1
TU120569 other downstream 354279 3639434 ~ 3800352 (+) True G106575
TU120618 other downstream 391110 3676265 ~ 3677850 (+) False G106595

Expression Profile