RNA id: TU121501


Basic Information

Item Value
RNA id TU121501
length 716
lncRNA type antisense_over
GC content 0.57
exon number 3
gene id G107219
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3367145 ~ 3425978 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACATCTAATtctaggacctgtctgtctgtctctgggtctctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctctgggtctctgtccgtccgtctgtctctgggtctctgtccgtccgtccgtctgtctctgggtctctgtctgtccgtccgtctgtctctgggtctctgtccgtccgtccgtctgtctctgggtctctgtctgtccgtccgtctgtctctgggtctctgtccgtctgtctctgggtctctgtccgtctgtctctgggtctctgtccgtccgtccgtctgtctctgggtctctgtctgtccgtccgtctgtctctgggtctctgtctgtctgtccgtccgtccgtctgtctctgggtctctgtccgtctgtctctgggtgtctgtccgtctgtccgtctgtctctgggtctctgtccgtctgtctctgggtctctggccgtctgtctctgggtctctggccgtctgtctctgggtctctggccgtctgtctctgggtctctgtccgtctgtctctgggtctctgtccgtctgtctctgggtctctgtccgtctgtccgtccgtccgtccgtctgtctgtgagCCCAGTTCTCAGATCTTTCTCCTGAAGTATACTATCTCACTTGTGCACAGCTTCCCACACATTGAATGAAAAGTGTTGTATTGGTGAGTTTATG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121586 lncRNA downstream 6403 3414342 ~ 3415480 (-) False G107261
TU121587 lncRNA downstream 6403 3414342 ~ 3415480 (-) True G107261
TU121533 lncRNA downstream 26732 3392231 ~ 3395151 (-) True LOC118937342
TU121537 lncRNA downstream 27653 3392063 ~ 3394230 (-) False LOC118937342
TU121534 lncRNA downstream 28265 3392063 ~ 3393618 (-) False LOC118937342
TU121597 lncRNA upstream 9262 3431926 ~ 3433121 (-) True G107270
TU121609 lncRNA upstream 32759 3455423 ~ 3456292 (-) False G107282
TU121610 lncRNA upstream 32759 3455423 ~ 3456292 (-) True G107282
TU121635 lncRNA upstream 82317 3504981 ~ 3506013 (-) True G107303
TU121642 lncRNA upstream 90849 3513513 ~ 3513988 (-) True G107306
XM_036935254.1 mRNA downstream 16771 3392646 ~ 3405112 (-) False LOC118937342
XM_036935217.1 mRNA downstream 30871 2644890 ~ 3391012 (-) True cdkal1
XM_036935222.1 mRNA downstream 31138 2644890 ~ 3390745 (-) False cdkal1
XM_036961533.1 mRNA downstream 885721 2533802 ~ 2536162 (-) True LOC110511524
XM_036961522.1 mRNA downstream 902861 2518187 ~ 2519022 (-) True LOC110514306
XM_036961539.1 mRNA upstream 18422 3441086 ~ 3443541 (-) True LOC118944031
XM_036935266.1 mRNA upstream 24493 3447157 ~ 3520769 (-) True LOC110514058
XM_036935302.1 mRNA upstream 104706 3527370 ~ 3663400 (-) False LOC110512975
XM_036935282.1 mRNA upstream 104706 3527370 ~ 3663402 (-) False LOC110512975
XM_036935295.1 mRNA upstream 104706 3527370 ~ 3663402 (-) False LOC110512975
TU119712 other downstream 936760 2483860 ~ 2485123 (-) True G106003
TU119710 other downstream 938527 2482941 ~ 2483356 (-) True G106001
TU119611 other downstream 1058352 2362999 ~ 2363531 (-) True G105938
TU119210 other downstream 1301382 2118079 ~ 2120501 (-) False G105636
TU119012 other downstream 1460296 1958484 ~ 1961587 (-) True G105492
TU121654 other upstream 329897 3752561 ~ 3776178 (-) False LOC110506994
TU121655 other upstream 329897 3752561 ~ 3776178 (-) True LOC110506994
TU121876 other upstream 568662 3991326 ~ 3992847 (-) True G107456
TU122066 other upstream 872761 4295425 ~ 4296815 (-) True G107574
TU122094 other upstream 874781 4297445 ~ 4300230 (-) False G107576

Expression Profile