RNA id: TU120351


Basic Information

Item Value
RNA id TU120351
length 299
lncRNA type intronic
GC content 0.47
exon number 3
gene id G106439
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3369635 ~ 3370092 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCTGTTAGCTGCTTTTTAAACACTCTCCAGCTCTCATATTACATGGTAGGTTTAAAACCACTCTCCAGCTCTCATATTACATGGTAGGTTTAAAACCACTCTCCAGCTCTCATATTACATGGTAGGTTTAAAACCACTCTCCAGCTCTCATATTACATGGTAGGTTTAAAACCACTCTCCAGCTCTGCAGGTTGTGTGTAGTAGAGAAGGGCTGTGGGAGGGGCCACAGCTCTGCAGGTTGTGTGTAGTACAGAAGGGCTGGTGGGAGGGGCCACAGCTCTGCAGGTTGTGTGTAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120223 lncRNA upstream 84480 3284320 ~ 3285155 (+) True G106400
TU120210 lncRNA upstream 100757 3268632 ~ 3268878 (+) True G106388
TU120192 lncRNA upstream 122921 3246409 ~ 3246714 (+) True G106371
TU120187 lncRNA upstream 126704 3242357 ~ 3242931 (+) False G106368
TU120362 lncRNA downstream 22610 3392702 ~ 3395056 (+) True G106450
TU120368 lncRNA downstream 29336 3399428 ~ 3399851 (+) True G106454
TU120322 lncRNA downstream 40832 3410924 ~ 3411298 (+) True mboat1
TU120403 lncRNA downstream 46457 3416549 ~ 3447539 (+) False G106461
TU120414 lncRNA downstream 59697 3429789 ~ 3431551 (+) True G106463
XR_005034604.1 mRNA upstream 389442 2978786 ~ 2980193 (+) False LOC118937337
XR_005034605.1 mRNA upstream 389442 2978813 ~ 2980193 (+) False LOC118937337
XR_005034606.1 mRNA upstream 389442 2978829 ~ 2980193 (+) False LOC118937337
XR_005034607.1 mRNA upstream 389442 2979903 ~ 2980193 (+) True LOC118937337
XR_005034608.1 mRNA upstream 391111 2978236 ~ 2978524 (+) True LOC118937340
XM_036935245.1 mRNA downstream 37095 3407187 ~ 3422099 (+) False mboat1
XM_036935236.1 mRNA downstream 37098 3407190 ~ 3422099 (+) False mboat1
XM_036935433.1 mRNA downstream 680691 4050783 ~ 4065607 (+) True colec10
XM_036935438.1 mRNA downstream 695900 4065992 ~ 4085680 (+) True mal2
XM_036935442.1 mRNA downstream 743030 4113122 ~ 4119742 (+) True LOC110507036
TU120020 other upstream 330160 2974823 ~ 3039475 (+) True G106240
TU119854 other upstream 651110 2717961 ~ 2718525 (+) True G106122
TU119728 other upstream 841663 2520716 ~ 2527972 (+) True G106019
TU118283 other upstream 1659078 1708969 ~ 1710557 (+) True G105042
TU118276 other upstream 1669204 1699073 ~ 1700431 (+) True G105036
TU120569 other downstream 269342 3639434 ~ 3800352 (+) True G106575
TU120618 other downstream 306173 3676265 ~ 3677850 (+) False G106595
TU120871 other downstream 656983 4027075 ~ 4027594 (+) True G106775
TU120937 other downstream 767721 4137813 ~ 4138496 (+) False G106814
TU120940 other downstream 767721 4137813 ~ 4138496 (+) True G106814

Expression Profile