RNA id: TU120362


Basic Information

Item Value
RNA id TU120362
length 2293
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G106450
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3392702 ~ 3395056 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTATAAATACATATTCACattgatataaatatgaaattAAAGATCAAGAGAGGAAATGTATTGacaaaatgttttgtgcactTGGGGgggattttttttctacattttccaGTACCTTTATAACAAGCAAAATCATATTAGAGACGCGAACACTGGCAAAATTGTAATCCCAAAAGGTATGGAAAAATGGGATAATTCAACGATGGCAACAATACTACCTAACTATTCAGTTCAGTAaattcctccattctcctccatGAGAAACACCAATAACGTAAGTGAATCCCCAACCCTGGTTACATGAACTCATCGCTTGAAGAGTTCGGTTTCATTACTATCACCAAGGAACGCGCTCACTACGCAAAaaccatttacacacacacacacaaattaactggctaaaacacaaacacacgaaTGGAAACCAAGCCATTATATCAGAATATTAATTCATATATGCATCATTCTATCAACATAACACATCCACGTGCCTGACCATCAAGTCACCACCAAACCATCCTAGACCTCTGAACTCAGATACAGGTAAGAGGTAAGCCAAACAGTCTGTCACCATGACTACAGCTCTAGAAATCAGAACCTCTACTGAAATGGCCACCTATCTGACTAACATAAAACACCCCAAAAATAAACAAGCATTAGCATAGTAATAAAACAACATCTAGAGCCAGAGGTCGTCTACAGTACCTAGTGAGTGATCAGAATCATACCTTCATTTAAAGAAGATGGTTTCTAGACTTCAGggcaccaacccccccccccagcttaTACCAACATCCAGTCAGCAAGGCAATATCATTCAATTATCATCTAGGGCTAACTTAAGACTATCCTGTCTCTACTTCACTGTGACATCGACAAAAATGATCCAACAAtatctagccccccccccccacccaattAGCCGAATGAACATACAACTGAACACATTTAAGAGTTCATTCGGCATCCAAATCaaccaagtagccacccttgatcTGCTTGGTGAAAAGTTCCTTCCTTTTCTTCTCCACACAAAAAGAAATGTTGATGTCCGTCAGAAACACATTTCCCTTTAAGTAGAGGGAGATGTCCCATTCATGAGCTTGTGATTTTAAAATGGGGGGGTGATGGCTGTGTTAAAATATTCAGATGAGCACCGTAAGCAAGCGTAAGGTCCATCTACAACAGCATTGCTCGCTGACTAAAGGGTACATCTGTAGAGGGTATACGGTAATACTGATTGTACACCCAAAAGGGGCGCTATTTTTTGAGGCACAAAACAACTTAGGCAACAGGGCTCTTAAATCCAAGAGGGGGTTGAATATCTCTGTTGTAAACAAGAGACGCTTGTTCTTAACATCTCGCTACTTAGCTTGCACGTTAGCAAACCAAacgctggagccctgagctggatatCATTTCACACATCTTAGATTCCCTTATACTTAACCTTTAGATATACAGCACacaacacccccccccacccccccaaaagaAAAGTATTGAAAATCATGATATCGATATTTCTAAATCCCCAGTAGAAGGTATAGCGCCCAAGCCTCATCAGCACAGAGCCCAAGACTCTCTTTCCAAGATCATTTGAGGAATTCCATCAGAGCAATAACATACCGGTTGCTTTTAAACTGTGGTTGTTCTTGGAAATATCCATTCAAATCGATACAGACCGGGACAGACCAACTTGGGTTTCTGATTAAACCACGACTTGTTGAATTTAAATTTGGCTGACGCTTGTAAATCCATTATTTGcccacagcaacaacaaaaaaaaggctAAATATCCCTCGTCAGTCATTAGACAGTTAATATGAATGTCAGTTATAAGTAGGAGATAATATCTTGACAAGTCCCCAATCGAAACTAAGGGGTCAACTTGTACTTTATCATACAGTATCTCCACAATGAGTGTTGCTCTAAAATATTAAGAGTAGAGGCCCTGGTTCCTAAAAAGTTTCAAAGACAAACTCAATGGTTTTTGTGCCAAAATCACTCTCACTGCCATATTCTACATACGAAGACAAAAGCATAGAACTCATCGGCACAAACGTAGATCAGCCATAGGGTCAAACTGGTCACCTGACACGGCAGAGAAGCATCCAGAAGGAACACACGAGCAGCTGTCTAAAAACACACCGTTACAGAGGGGTTTCCACCTGCACCAGTTTGGATAAAAGGCAGCTCTCAGTGATCAAGAAGGTCTGAGAAGTGAGAGAAAGAGTTGGTCAGGGTCGTTTTCATTAGGCCACAAGCGAGGCTAAACATTTCCGCAACCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120351 lncRNA upstream 22610 3369635 ~ 3370092 (+) True G106439
TU120223 lncRNA upstream 107547 3284320 ~ 3285155 (+) True G106400
TU120210 lncRNA upstream 123824 3268632 ~ 3268878 (+) True G106388
TU120192 lncRNA upstream 145988 3246409 ~ 3246714 (+) True G106371
TU120187 lncRNA upstream 149771 3242357 ~ 3242931 (+) False G106368
TU120368 lncRNA downstream 4372 3399428 ~ 3399851 (+) True G106454
TU120322 lncRNA downstream 15868 3410924 ~ 3411298 (+) True mboat1
TU120403 lncRNA downstream 21493 3416549 ~ 3447539 (+) False G106461
TU120414 lncRNA downstream 34733 3429789 ~ 3431551 (+) True G106463
TU120416 lncRNA downstream 36908 3431964 ~ 3433787 (+) True G106465
XR_005034604.1 mRNA upstream 412509 2978786 ~ 2980193 (+) False LOC118937337
XR_005034605.1 mRNA upstream 412509 2978813 ~ 2980193 (+) False LOC118937337
XR_005034606.1 mRNA upstream 412509 2978829 ~ 2980193 (+) False LOC118937337
XR_005034607.1 mRNA upstream 412509 2979903 ~ 2980193 (+) True LOC118937337
XR_005034608.1 mRNA upstream 414178 2978236 ~ 2978524 (+) True LOC118937340
XM_036935245.1 mRNA downstream 12131 3407187 ~ 3422099 (+) False mboat1
XM_036935236.1 mRNA downstream 12134 3407190 ~ 3422099 (+) False mboat1
XM_036935433.1 mRNA downstream 655727 4050783 ~ 4065607 (+) True colec10
XM_036935438.1 mRNA downstream 670936 4065992 ~ 4085680 (+) True mal2
XM_036935442.1 mRNA downstream 718066 4113122 ~ 4119742 (+) True LOC110507036
TU120034 other upstream 1669 3206797 ~ 3391033 (+) True G106253
TU120020 other upstream 353227 2974823 ~ 3039475 (+) True G106240
TU119854 other upstream 674177 2717961 ~ 2718525 (+) True G106122
TU119728 other upstream 864730 2520716 ~ 2527972 (+) True G106019
TU118283 other upstream 1682145 1708969 ~ 1710557 (+) True G105042
TU120569 other downstream 244378 3639434 ~ 3800352 (+) True G106575
TU120618 other downstream 281209 3676265 ~ 3677850 (+) False G106595
TU120871 other downstream 632019 4027075 ~ 4027594 (+) True G106775
TU120937 other downstream 742757 4137813 ~ 4138496 (+) False G106814
TU120940 other downstream 742757 4137813 ~ 4138496 (+) True G106814

Expression Profile