RNA id: TU120399


Basic Information

Item Value
RNA id TU120399
length 3539
lncRNA type read_through
GC content 0.43
exon number 7
gene id G106461
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3416549 ~ 3447539 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTGAAGATGTTTATTGCCACTAAATAATGAAACGACTTAGTCCCCCCCCTAATAAACCTGCTGTTATGTGCTCTACTGTTGTATTTACAGATATACTAAAAGTCCAACATTTCACTCAGCCTAACAATTAAAATTCTGAATTAGTTTCATGATTAGCATGCAGCTATGGCGTTATCGAGTTATCcgccaaaaaaacaaaacacagcaTTTCCATTGGAATTATGGGAGATGTTTTTCGTATTCTGAAAGTCCAAAATGGAGGAGGTTGTTTGTGACCGTGTGACATGAGCAGCTTCTTCCTTCTACAGTACATGCAAAAAAAAGGATATATTCAGCATTTCAGGGACAATCTGCCTCACAACGTAACAAAATAAATCATTACTGAATAACCTTTTTCCTACTTAACACAGACCCTTCAATCGCTACGTAGGATCGAAAATAatctgtataaaataaataaaatccaaaATCATGCcaatataaaaatgtaatttaaaaacaacaacattttaaatGCTCAGTTCTACATCAGAGTGTTTCAACAACTGAGTTGGTCTTCTTCTACAGAAACTACAATGACAATCAGACCTTCGTTTAGTTGAAACTCATTAAGAACGACCGAACACAAAGGGATAAGATAAGTACAAcgctttccttccttccttccttccttccttccttcctaatGAGTACTTTGTGCTTAACAGTTTTCCTTCAAAATCACataaataacatttatttattttttatttttttaaataattatcttcagaccagtgcttaatttgtatATTTGGAGGCGCcagaacaacaaaaaaaagtgagTGCTAGAGGGGATTGTCCTGGGGAGTTCTGAGGTAGCAGAACGCAGGAGAGAGAAAtcccctttataataaagcacAGAATACGTAGCATCACATTTGCGTTGTGGCATGGAGCAGTtagagtagaggcacttacacAAGTCATACACACGGGGAACATTTTTAGTAGCCCGCGAGGTCCGGGGGAAATGTTGGCCTTTCAtaaattacattacattacacatctATTTACACGACTGGAGACTTTGCCagaatattattttttaaatacagcaCAAAATGATAGAAACGGCAGGCTCCTTTGACACGgacaaactgagaatctgagatcaataaaaacagcgtttgtcttgaatccatcactAGCCCAGGCCTCGGTGTGTGGAGACACGTTGTAGgttacaatatgaggaggaaatgatAGTCCTAATAATGccttccagtttcactgactctcCCCCCATGATGCACAGCTCACTGGCTGGGGATGGTCGATGTGCTCGTGCCaaaagcttctctctctctctctctgtctctctctctccctctctctctctctctctctctctctctctctctctctcagtacctcTAAAACAATCTGTTCCCAAAGGTAGTATACGGTCTGTCTCAGAATACAACTGCTTTAATAATCACTGAAGGaggctgtcagagagagaaacagagagagagagagaaggggggggggggggggagacatacagagagagagggagagagagagagagaggataaggtTACCTCAGTGTGAATGAATGGGACATCAATATGAATCACCATAGGGCTCTGGAGAAAAGTCccaaaagggtgccatttgggacaaatcccTAGCTATAAAGGCAGGCAGATGATGAACCTGTACTGTTAGTGGAGGTTACTGGGACTGTAGTCGAGGTTACTGGGACTGTAGTGGAGGTTACTGGGACTGTAGTGGAGGTTACTGGGACTGTACTGTTAGTGGAGGTTACTGGGACTGTAGTGGAGGTTACTGGGACTGTACTGTTAGTGGAGGTTACTGGGACTGTAGTGGAGGTTACTGGGACTGTAGTGGAGGTTACTGGGACTGTACTGCTACTCAACAGAGTTCTAGAGGCTGTGAGTAGGCTTGCTTTCCATATACTGCTCAATATCCAGATAAGAGACTAGATTACAGGCGTATGCATGTTAAGATGAGAGTTTCCACAACCAATAGCCAACTCATGTGGATAATGCACACAGACAGTCATGCTTGGGGTGAGTTGGCTCCACAACGCCCTCTGGTGGTAGGATTATATGCCCAGCACTCAATAAAGCTGTCCACCTTTACCACAGGCGTCAGACTCGTTCCATTATATGTCTATGGgccgagtgtctgtgggtttttgcTCCTCGTTTGTACTTGAATGATCGagtaaggtcactgattagttaGGAACACccctcctcacctggttgtctaggtcgtCATtggttagttaggaactcccctcacctggttgtctaggtcttaattggttaggaactcccctcacctggttgtctcccTCTTAATTGGTCTTAAAAACCAGCTGACACTGGGCCATGGAATGAGTGACACCCCTGACCCCTGGTATCCATACAACCCTAGTATCATGGGACTTCCAAATCTGGTCTCATTGACTGAGTGAAGATGGGGTCTCCGGGGGGGTAAACTGTCCCAAAACATCTAAAAGTGACAAGTAATATGAATCTCTCCCAAGTTACACAGGCTCCCTAGAGTTACTCAAATTCCTCATCTCAAACTCAAACACTAAATCCTCCAAAACAAAGAGATGGAAACTCTCAAACACCAAATCCTCCAAAACAAAGAGATGGAAACTCTCAAACACCAAATCCTCCAAAACAAAGAGATGGAAACTCTCAAACACCAAATCCTCCAAAACAAAGAGATGTATACTCTCAAACACCAacacctacactctaaccactgaaATCCAGTAGGAAAGGTCCAACCTCAGTATACTAACTGAAGACTGAATAGTTTCTGTAAATGTGTTATCTAGCTATAGCAGCTGGCCTTGTCCTCTCCTCACACGGTCCTTTAATCTAAAGAGACAACAGCCACACAGCATGTTGATTACTTACACCAGATGTTGCAggaatatcccccccccccccccccgttgagAGATATTAAAGTTCAATTGAACTGAATTGAGTGTAGTCCACCAGAAATCCATCCTGACCACCTCTAACTGATTAGGACTAAGTTACACCAAACTTAAAAAAAGGAAAAGTTGCACCAAactcaaaaaacaaaacaaaacccaAAGAAGCAGCAGGAAACGTGGTTGGAAGAAGTGGTCCACTTGTATTTATATCATCGTTGTTGTTTTTCTTCATACTGCTTTTTGAACGTTGCAGTAGGAACTATTTAAGACGTTGACATCAACAATTGACATCCGTAGTCACGCTTGATTGAGGTTATTCATTACGCAGTAGTTAGGTTGTGAAGTAGCAGGTAGTCCAACGataagttctctctctctcgctctctctcttcccgagAAGGTGAGTCTTTCTGTCAAGTTGCCTCAACTGCTGCTGCTGCCAGTGGAGATGGAGGTTAGTGATCCATCTTTACCCTCCCTCTCCGCTGCTTTCTTCTTCGTCTCATCTTTGAAGAAGAGGAGCGGGAACATCCCTAAGATGCAGCCGATGGCAACGCCGATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120417 lncRNA upstream 5949 3435584 ~ 3436547 (+) True G106466
TU120416 lncRNA upstream 8709 3431964 ~ 3433787 (+) True G106465
TU120414 lncRNA upstream 10945 3429789 ~ 3431551 (+) True G106463
TU120322 lncRNA upstream 31198 3410924 ~ 3411298 (+) True mboat1
TU120368 lncRNA upstream 42645 3399428 ~ 3399851 (+) True G106454
TU120430 lncRNA downstream 9740 3457279 ~ 3457863 (+) False G106478
TU120432 lncRNA downstream 9740 3457279 ~ 3457863 (+) True G106478
TU120477 lncRNA downstream 76415 3523954 ~ 3524217 (+) True G106518
TU120419 lncRNA downstream 77584 3525123 ~ 3526728 (+) True G106468
TU120421 lncRNA downstream 83425 3530964 ~ 3531602 (+) True G106470
XM_036935245.1 mRNA upstream 20397 3407187 ~ 3422099 (+) False mboat1
XM_036935236.1 mRNA upstream 20397 3407190 ~ 3422099 (+) False mboat1
XR_005034605.1 mRNA upstream 462303 2978813 ~ 2980193 (+) False LOC118937337
XM_036935433.1 mRNA downstream 603244 4050783 ~ 4065607 (+) True colec10
XM_036935438.1 mRNA downstream 618453 4065992 ~ 4085680 (+) True mal2
XM_036935442.1 mRNA downstream 665583 4113122 ~ 4119742 (+) True LOC110507036
XM_036935488.1 mRNA downstream 789341 4236880 ~ 4302536 (+) False deptor
XM_036935491.1 mRNA downstream 789345 4236884 ~ 4302536 (+) False deptor
TU120299 other upstream 16541 3367205 ~ 3425955 (+) False mboat1
TU120034 other upstream 51463 3206797 ~ 3391033 (+) True G106253
TU120020 other upstream 403021 2974823 ~ 3039475 (+) True G106240
TU119854 other upstream 723971 2717961 ~ 2718525 (+) True G106122
TU119728 other upstream 914524 2520716 ~ 2527972 (+) True G106019
TU120569 other downstream 191895 3639434 ~ 3800352 (+) True G106575
TU120618 other downstream 228726 3676265 ~ 3677850 (+) False G106595
TU120871 other downstream 579536 4027075 ~ 4027594 (+) True G106775
TU120937 other downstream 690274 4137813 ~ 4138496 (+) False G106814
TU120940 other downstream 690274 4137813 ~ 4138496 (+) True G106814

Expression Profile