RNA id: TU120416


Basic Information

Item Value
RNA id TU120416
length 1349
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G106465
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3431964 ~ 3433787 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atctacctccagtaTCCCTGCTCACCGTTAATATgatactggaactgaccctgtgtCTACAGTAGCTAACTTCTCATGGTCTTATTTCTTATATCTCccgtgtttttgttctaccttgttatttcaGTACCACATTGAtgttgattactgcattgttcgGGTTTTTAGAGTTTGCAAGAAAAGCATTTCAGTCTTGGTAATCAAGAGTACAAATGGAACACCCCACATAACATATTGTTCCATTGCTAATCAAGAGTACAAATGGGACACCCCACATAACATATTGTTCCCTTAGTAATCAAGAGTACAAATGGAACACCCCACATAACATATTGTTCCATTGGTAATCAAGAGTAAAAATGGAACACCCCACATAACATATTGTTCCATTGGTAATCAAGAGTACAAATGGGACACCCCACATAACATATTGTTCCCTTAGTAATCAAGAGTACAAATGGAACACCCCACATAACATATTGTTCCATTGGTAATCAAGAGTACAAATGGAACACCCCACATAACATATTGTTCCCTTAGTAATCAAGAGTACAAATGGAACACCCCACATAACATATTGTTCCCTTATTAATCAAGAGTACAAATGGAACACCCCACATAACATATTGTTCCCTTATTAATCAAGAGTACAAATGGGACACCCCACATAACATATTGTTCCATTGGTAATCAAGAGTACAAATGGGACACCCCACATAACATATTGCTGTATCTCTGAAGTTGCTTAAAAACCTGCTAAACTTTCAACAATTAACAGTGTCCTTCCTCACCAGAtctagacagggagagatgagagacgaGCATCTCCTTCCCTGGGtctagacagggagagatgagagaggagcatctccTTCCCTGGGtctagacagggagagatgagagaggagcatCTCCTTCCCTGGGtctagacagggagagatgagagaggagcatCTCCTCCTTCCCTGGGtctagacagggagaggagagagatgagcatCTCCTTCTTCCCTGGGtctagacagggagaggagagagaggagcatctCCTAACCAGCCCCCCTTGGACAATGTGGAGAGACATTAGATCCAAGTCACAAATGTTACCCTGTTCCTTATCCAGCGCAATACGTTTTGACCAGGACCAGTAGCGCACTATGtcgggaataggttgccatttgggacacaagccttCATTGCAGTACAGTAAGTGGCCCCTGGCCAGAGATTCTCCTCGTCAAACCTGCTGAGAGAAGATCAGTTTCATTTCACTGGTTCATTCATCATCTTTAATCCTTCCCCCGCCCCCCGCTCTCCTCTCACAGTCTGTGAAGATgcctcagtccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120414 lncRNA upstream 413 3429789 ~ 3431551 (+) True G106463
TU120334 lncRNA upstream 5433 3367205 ~ 3426531 (+) False mboat1
TU120260 lncRNA upstream 5966 3367205 ~ 3425998 (+) False mboat1
TU120272 lncRNA upstream 5966 3367205 ~ 3425998 (+) False mboat1
TU120319 lncRNA upstream 5966 3367205 ~ 3425998 (+) False mboat1
TU120417 lncRNA downstream 1797 3435584 ~ 3436547 (+) True G106466
TU120410 lncRNA downstream 6021 3439808 ~ 3447539 (+) False G106461
TU120375 lncRNA downstream 8709 3442496 ~ 3447539 (+) False G106461
TU120399 lncRNA downstream 8709 3442496 ~ 3447539 (+) False G106461
TU120400 lncRNA downstream 8709 3442496 ~ 3447539 (+) False G106461
XM_036935245.1 mRNA upstream 9865 3407187 ~ 3422099 (+) False mboat1
XM_036935236.1 mRNA upstream 9865 3407190 ~ 3422099 (+) False mboat1
XR_005034605.1 mRNA upstream 451771 2978813 ~ 2980193 (+) False LOC118937337
XM_036935433.1 mRNA downstream 616996 4050783 ~ 4065607 (+) True colec10
XM_036935438.1 mRNA downstream 632205 4065992 ~ 4085680 (+) True mal2
XM_036935442.1 mRNA downstream 679335 4113122 ~ 4119742 (+) True LOC110507036
XM_036935488.1 mRNA downstream 803093 4236880 ~ 4302536 (+) False deptor
XM_036935491.1 mRNA downstream 803097 4236884 ~ 4302536 (+) False deptor
TU120299 other upstream 6009 3367205 ~ 3425955 (+) False mboat1
TU120034 other upstream 40931 3206797 ~ 3391033 (+) True G106253
TU120020 other upstream 392489 2974823 ~ 3039475 (+) True G106240
TU119854 other upstream 713439 2717961 ~ 2718525 (+) True G106122
TU119728 other upstream 903992 2520716 ~ 2527972 (+) True G106019
TU120569 other downstream 205647 3639434 ~ 3800352 (+) True G106575
TU120618 other downstream 242478 3676265 ~ 3677850 (+) False G106595
TU120871 other downstream 593288 4027075 ~ 4027594 (+) True G106775
TU120937 other downstream 704026 4137813 ~ 4138496 (+) False G106814
TU120940 other downstream 704026 4137813 ~ 4138496 (+) True G106814

Expression Profile