RNA id: TU120430


Basic Information

Item Value
RNA id TU120430
length 370
lncRNA type intronic
GC content 0.49
exon number 2
gene id G106478
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3457279 ~ 3457863 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attttttctcattttgtctgtcatagttgaagtgtacctatgatggaaattacatgCCTCTCTTAACCTCTCTCCAGTTTCATCCTGACAGGTTAGAGGACATCATTAACCTCTCTCCAGTTTCATCCTGACAGGTTAGAGGACATCATTAACCTCTCTCCAGTTTCATCCTGACAGGTTAGAGGACATCATTAACCTCTCTCCAGTTTCACCCTGACAGGTTAGAGGACATCATTAACCTCTCTCCAGTTTCATCCTGACAGGTTAGAGGACATCATAAACCTCTCTCCAGTTTCATCCTGACAGGTTagatgttacggtgcgtgaatgaggacccaaaagcgaattaacttaaacagagcttctttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120403 lncRNA upstream 9740 3416549 ~ 3447539 (+) False G106461
TU120410 lncRNA upstream 9740 3439808 ~ 3447539 (+) False G106461
TU120375 lncRNA upstream 9740 3442496 ~ 3447539 (+) False G106461
TU120399 lncRNA upstream 9740 3442496 ~ 3447539 (+) False G106461
TU120400 lncRNA upstream 9740 3442496 ~ 3447539 (+) False G106461
TU120477 lncRNA downstream 66091 3523954 ~ 3524217 (+) True G106518
TU120419 lncRNA downstream 67260 3525123 ~ 3526728 (+) True G106468
TU120421 lncRNA downstream 73101 3530964 ~ 3531602 (+) True G106470
TU120480 lncRNA downstream 79118 3536981 ~ 3537309 (+) True G106520
TU120491 lncRNA downstream 86616 3544479 ~ 3545128 (+) True G106523
XM_036935245.1 mRNA upstream 35180 3407187 ~ 3422099 (+) False mboat1
XM_036935236.1 mRNA upstream 35180 3407190 ~ 3422099 (+) False mboat1
XR_005034605.1 mRNA upstream 477086 2978813 ~ 2980193 (+) False LOC118937337
XM_036935433.1 mRNA downstream 592920 4050783 ~ 4065607 (+) True colec10
XM_036935438.1 mRNA downstream 608129 4065992 ~ 4085680 (+) True mal2
XM_036935442.1 mRNA downstream 655259 4113122 ~ 4119742 (+) True LOC110507036
XM_036935488.1 mRNA downstream 779017 4236880 ~ 4302536 (+) False deptor
XM_036935491.1 mRNA downstream 779021 4236884 ~ 4302536 (+) False deptor
TU120299 other upstream 31324 3367205 ~ 3425955 (+) False mboat1
TU120034 other upstream 66246 3206797 ~ 3391033 (+) True G106253
TU120020 other upstream 417804 2974823 ~ 3039475 (+) True G106240
TU119854 other upstream 738754 2717961 ~ 2718525 (+) True G106122
TU119728 other upstream 929307 2520716 ~ 2527972 (+) True G106019
TU120569 other downstream 181571 3639434 ~ 3800352 (+) True G106575
TU120618 other downstream 218402 3676265 ~ 3677850 (+) False G106595
TU120871 other downstream 569212 4027075 ~ 4027594 (+) True G106775
TU120937 other downstream 679950 4137813 ~ 4138496 (+) False G106814
TU120940 other downstream 679950 4137813 ~ 4138496 (+) True G106814

Expression Profile