RNA id: TU120477


Basic Information

Item Value
RNA id TU120477
length 264
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G106518
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3523954 ~ 3524217 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaatacatcaaacaaacATAGTTTCCATGGTTTCCGTGTGTTTGCTGCCATTCCATCCACTCCGTTCCAGgtgttattatgagccgttctctcctcagcagcctccactgaaagATAGATATACACCGAGtggacaaaatattaggaacacctgctctttccatgacagactgaccaggtgaatccaggtgaaagatatgatcccttattgatgtcactttgttaaatccacttcaatcagtgtagatgaaggggaggagacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120430 lncRNA upstream 66091 3457279 ~ 3457863 (+) False G106478
TU120432 lncRNA upstream 66091 3457279 ~ 3457863 (+) True G106478
TU120399 lncRNA upstream 76415 3442496 ~ 3447539 (+) False G106461
TU120419 lncRNA downstream 906 3525123 ~ 3526728 (+) True G106468
TU120421 lncRNA downstream 6747 3530964 ~ 3531602 (+) True G106470
TU120480 lncRNA downstream 12764 3536981 ~ 3537309 (+) True G106520
TU120491 lncRNA downstream 20262 3544479 ~ 3545128 (+) True G106523
TU120485 lncRNA downstream 20498 3544715 ~ 3549069 (+) True G106522
XM_036935245.1 mRNA upstream 101855 3407187 ~ 3422099 (+) False mboat1
XM_036935236.1 mRNA upstream 101855 3407190 ~ 3422099 (+) False mboat1
XR_005034605.1 mRNA upstream 543761 2978813 ~ 2980193 (+) False LOC118937337
XM_036935433.1 mRNA downstream 526566 4050783 ~ 4065607 (+) True colec10
XM_036935438.1 mRNA downstream 541775 4065992 ~ 4085680 (+) True mal2
XM_036935442.1 mRNA downstream 588905 4113122 ~ 4119742 (+) True LOC110507036
XM_036935488.1 mRNA downstream 712663 4236880 ~ 4302536 (+) False deptor
XM_036935491.1 mRNA downstream 712667 4236884 ~ 4302536 (+) False deptor
TU120313 other upstream 36825 3367205 ~ 3487129 (+) False mboat1
TU120329 other upstream 36825 3367205 ~ 3487129 (+) False mboat1
TU120299 other upstream 97999 3367205 ~ 3425955 (+) False mboat1
TU120034 other upstream 132921 3206797 ~ 3391033 (+) True G106253
TU120020 other upstream 484479 2974823 ~ 3039475 (+) True G106240
TU120569 other downstream 115217 3639434 ~ 3800352 (+) True G106575
TU120618 other downstream 152048 3676265 ~ 3677850 (+) False G106595
TU120871 other downstream 502858 4027075 ~ 4027594 (+) True G106775
TU120937 other downstream 613596 4137813 ~ 4138496 (+) False G106814
TU120940 other downstream 613596 4137813 ~ 4138496 (+) True G106814

Expression Profile