RNA id: TU120480


Basic Information

Item Value
RNA id TU120480
length 284
lncRNA type antisense_over
GC content 0.54
exon number 2
gene id G106520
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3536981 ~ 3537309 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGTGGAGGTAATGCTTGACTCCTGCTCCCTGGTGCTGGGATGACTCCAGCAGGCAGTGGTAGACTCCTGCCCCCAGGTGCTGGGATGACACCAGCAGGCAGTGGTAGTGGGGCATAGCTGGTGTCTGCTGGTACAGGATCCTTGTCCTTCCTCCTTCTAAGGGTGTTCACCATGGGCTGGTCATAGGGTCCTGGTTTAGCCCAGTCCTACAGGATACAGAAATATAGCTGAGTTCACCTCCTCTACCCAGTCCTACAGGATACAGAAATATAGCTGAGTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120421 lncRNA upstream 5379 3530964 ~ 3531602 (+) True G106470
TU120419 lncRNA upstream 10253 3525123 ~ 3526728 (+) True G106468
TU120477 lncRNA upstream 12764 3523954 ~ 3524217 (+) True G106518
TU120430 lncRNA upstream 79118 3457279 ~ 3457863 (+) False G106478
TU120432 lncRNA upstream 79118 3457279 ~ 3457863 (+) True G106478
TU120491 lncRNA downstream 7170 3544479 ~ 3545128 (+) True G106523
TU120485 lncRNA downstream 7406 3544715 ~ 3549069 (+) True G106522
TU120511 lncRNA downstream 38771 3576080 ~ 3576784 (+) True G106535
TU120530 lncRNA downstream 54730 3592039 ~ 3593732 (+) True G106543
TU120543 lncRNA downstream 67237 3604546 ~ 3605227 (+) True G106551
XM_036935245.1 mRNA upstream 114882 3407187 ~ 3422099 (+) False mboat1
XM_036935236.1 mRNA upstream 114882 3407190 ~ 3422099 (+) False mboat1
XR_005034605.1 mRNA upstream 556788 2978813 ~ 2980193 (+) False LOC118937337
XM_036935433.1 mRNA downstream 513474 4050783 ~ 4065607 (+) True colec10
XM_036935438.1 mRNA downstream 528683 4065992 ~ 4085680 (+) True mal2
XM_036935442.1 mRNA downstream 575813 4113122 ~ 4119742 (+) True LOC110507036
XM_036935488.1 mRNA downstream 699571 4236880 ~ 4302536 (+) False deptor
XM_036935491.1 mRNA downstream 699575 4236884 ~ 4302536 (+) False deptor
TU120313 other upstream 49852 3367205 ~ 3487129 (+) False mboat1
TU120329 other upstream 49852 3367205 ~ 3487129 (+) False mboat1
TU120299 other upstream 111026 3367205 ~ 3425955 (+) False mboat1
TU120034 other upstream 145948 3206797 ~ 3391033 (+) True G106253
TU120020 other upstream 497506 2974823 ~ 3039475 (+) True G106240
TU120569 other downstream 102125 3639434 ~ 3800352 (+) True G106575
TU120618 other downstream 138956 3676265 ~ 3677850 (+) False G106595
TU120871 other downstream 489766 4027075 ~ 4027594 (+) True G106775
TU120937 other downstream 600504 4137813 ~ 4138496 (+) False G106814
TU120940 other downstream 600504 4137813 ~ 4138496 (+) True G106814

Expression Profile