RNA id: TU120566


Basic Information

Item Value
RNA id TU120566
length 1796
lncRNA type read_through
GC content 0.41
exon number 3
gene id G106573
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3636815 ~ 3638985 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTCTACCATGTGACAGGGTTTCAACTAGACAGTCCATCTCCTCTACCATGTGACAGGGTTTCAACTAGACAGTCCACCTCCTCTACCATGTGACAGGGTTTCAACTAGACAGTCCACCTCCTCTACCATGTGACAGGGTTTCAACTAGACAGTCCACCTCCTCTACCATGTGACAGGGTTTCAACTAGACAGTCCATCTCCTCTACCATGTGACAGGGTTTCAACTAGACAGTCCATCTCCTCTACCATGTGACAGGGTTTCAACTAGACAGTCCACCTCCTCTACCATGTGACAGGGTTTCAACTAGACAGTCCACCTCCTCTACCATGTGACAGGGTTTCAACTAGACAGTCCACCTCCTCTACCATGTGACAGGGTATCAACTAGATCAACTAGACAGTCCACCTCCTCTACCATGTGGCCAGGGTTTCAACTTTCTGTTGACAGGATGTGACTCATCTTTGCTCATGCTATGAAGCTGTGAAAACAGTGTGGGTATGGAAAACATGGTGAGTCTTAAAGGTGGGAGTAAAACCTAGAATATTGCTTTGGGAAACAACACAAACCCTCACAGTGGTAAAGAGAGATAAACACTCCCTTTAAAGAGGAGCCAGTTAAGAGAAAAGTAAACTACACTTGAATGTCTTTTTCAGACTACTAAACAACCCCTTGTACTTATACGTAAGCctgaacagaacaacagaacagaagagaagagaacagaacagaacacaacagaacagaagagaacagaacagaatagaagagaacagaacacaacacaacagaacagaagagaacagaacacaacagaacagaagagaacagaacacaacagaacagaagagaacagaacacaacagaacagaagagaacagatcAGAACACAACAGAAGAGAATAGATCAGAAcacaacagaagagaacagaacacaacagaacagaacagaacacaacacaacagaagagaacagaacaacagaacagaagagaacagaacaggacagaagagaacagaacacaacacaacataacagaagagaacagaacagaacagaagagaacagaacagaacagaacagaagagaacagaacagaagagaacagaacaacacCTGCCCTCAGGTAAACCCTCTGACTGATCCAATCAAAGCCGGAGTGTTACTGTACCCATCTGTCCATGAAAGGTGACTACAATAAACCTTGGCACATTAAACACAGTAATACTTGAATGCAAACGGTTGTTCTTTGTGAGGATCGTTTAATTTACATTCTTATTACTTCAGGAGGCTCTGAGTCGGAAAGCTGTGTCGACTTTACATTCTTGGGGAAATAAAAATGTTGACAACAATGTCTTTTTTCAATCCAACCTTACTTCCCGTAGTTTAAACCTCTCCAAATAAGATGATAACAGGTGTAGGCCTATATACTCTATATCTAACCTCAACACCATCAACCACTCATttcatattaaactatattttTACATGAGTTTATGAGGTCACATTCCTGTCTCAATAAAGTATCTTGTAAAATCTGAACGAACATCAATATGGGACTAATATTGACGTACTGCAAGCCCACAACATGAAGACTGTATCTCATCTGCAGTCGTCTGTCACCAGTCCAAGTCTGGGAGGAAATAGATGAAATGATAagatcataaaaataaaaaaaattgaaaaaaacttTATTGATGTCTTTAATTCGTGCCAAAAATCGTGTGAGGCGCAACAACGCTATTGAAAACATTTGATGAGTGTAAAGCAGGTGTGTACAGGTTATAACTCACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120565 lncRNA upstream 280 3635640 ~ 3636535 (+) True G106572
TU120561 lncRNA upstream 4667 3631624 ~ 3632148 (+) True G106568
TU120557 lncRNA upstream 9173 3626526 ~ 3627642 (+) True G106564
TU120547 lncRNA upstream 27077 3609110 ~ 3609738 (+) True G106555
TU120543 lncRNA upstream 31588 3604546 ~ 3605227 (+) True G106551
TU120568 lncRNA downstream 53 3639038 ~ 3640178 (+) True G106574
TU120573 lncRNA downstream 4430 3643415 ~ 3645104 (+) True G106578
TU120575 lncRNA downstream 6502 3645487 ~ 3646053 (+) False G106579
TU120576 lncRNA downstream 6502 3645487 ~ 3648411 (+) False G106579
TU120578 lncRNA downstream 6502 3645487 ~ 3648411 (+) True G106579
XM_036935245.1 mRNA upstream 214716 3407187 ~ 3422099 (+) False mboat1
XM_036935236.1 mRNA upstream 214716 3407190 ~ 3422099 (+) False mboat1
XR_005034605.1 mRNA upstream 656622 2978813 ~ 2980193 (+) False LOC118937337
XM_036935433.1 mRNA downstream 411798 4050783 ~ 4065607 (+) True colec10
XM_036935438.1 mRNA downstream 427007 4065992 ~ 4085680 (+) True mal2
XM_036935442.1 mRNA downstream 474137 4113122 ~ 4119742 (+) True LOC110507036
XM_036935488.1 mRNA downstream 597895 4236880 ~ 4302536 (+) False deptor
XM_036935491.1 mRNA downstream 597899 4236884 ~ 4302536 (+) False deptor
TU120313 other upstream 149686 3367205 ~ 3487129 (+) False mboat1
TU120329 other upstream 149686 3367205 ~ 3487129 (+) False mboat1
TU120299 other upstream 210860 3367205 ~ 3425955 (+) False mboat1
TU120034 other upstream 245782 3206797 ~ 3391033 (+) True G106253
TU120020 other upstream 597340 2974823 ~ 3039475 (+) True G106240
TU120569 other downstream 449 3639434 ~ 3800352 (+) True G106575
TU120618 other downstream 37280 3676265 ~ 3677850 (+) False G106595
TU120871 other downstream 388090 4027075 ~ 4027594 (+) True G106775
TU120937 other downstream 498828 4137813 ~ 4138496 (+) False G106814
TU120940 other downstream 498828 4137813 ~ 4138496 (+) True G106814

Expression Profile