RNA id: TU120568


Basic Information

Item Value
RNA id TU120568
length 393
lncRNA type intronic
GC content 0.41
exon number 2
gene id G106574
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3639038 ~ 3640178 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatttatccgttattttaccaggtaagttgactgagaacacgttctcatttacagcaacgacctggggaATAAATAACACTGGggttatacagtacatacagtctaTGTCCTACCACTCAGACCTGGAGGGCCTAACCTTCCTAAATACTGATAGTTGCCATGGAGACAGCTCGTACTACACTCTCTAACTGactctactactataacctagtgttacctctctgactctactactataacctagtgttacctctgactctactactataacctagtgttacctctctgactctactactataacctagtgttacctctctgactctactactataacctagtgatacctctctgactctactactataacctagtgttatctctctgactc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120566 lncRNA upstream 53 3636815 ~ 3638985 (+) True G106573
TU120565 lncRNA upstream 2503 3635640 ~ 3636535 (+) True G106572
TU120561 lncRNA upstream 6890 3631624 ~ 3632148 (+) True G106568
TU120557 lncRNA upstream 11396 3626526 ~ 3627642 (+) True G106564
TU120547 lncRNA upstream 29300 3609110 ~ 3609738 (+) True G106555
TU120573 lncRNA downstream 3237 3643415 ~ 3645104 (+) True G106578
TU120575 lncRNA downstream 5309 3645487 ~ 3646053 (+) False G106579
TU120576 lncRNA downstream 5309 3645487 ~ 3648411 (+) False G106579
TU120578 lncRNA downstream 5309 3645487 ~ 3648411 (+) True G106579
TU120589 lncRNA downstream 22639 3662817 ~ 3663360 (+) True G106590
XM_036935245.1 mRNA upstream 216939 3407187 ~ 3422099 (+) False mboat1
XM_036935236.1 mRNA upstream 216939 3407190 ~ 3422099 (+) False mboat1
XR_005034605.1 mRNA upstream 658845 2978813 ~ 2980193 (+) False LOC118937337
XM_036935433.1 mRNA downstream 410605 4050783 ~ 4065607 (+) True colec10
XM_036935438.1 mRNA downstream 425814 4065992 ~ 4085680 (+) True mal2
XM_036935442.1 mRNA downstream 472944 4113122 ~ 4119742 (+) True LOC110507036
XM_036935488.1 mRNA downstream 596702 4236880 ~ 4302536 (+) False deptor
XM_036935491.1 mRNA downstream 596706 4236884 ~ 4302536 (+) False deptor
TU120313 other upstream 151909 3367205 ~ 3487129 (+) False mboat1
TU120329 other upstream 151909 3367205 ~ 3487129 (+) False mboat1
TU120299 other upstream 213083 3367205 ~ 3425955 (+) False mboat1
TU120034 other upstream 248005 3206797 ~ 3391033 (+) True G106253
TU120020 other upstream 599563 2974823 ~ 3039475 (+) True G106240
TU120618 other downstream 36087 3676265 ~ 3677850 (+) False G106595
TU120871 other downstream 386897 4027075 ~ 4027594 (+) True G106775
TU120937 other downstream 497635 4137813 ~ 4138496 (+) False G106814
TU120940 other downstream 497635 4137813 ~ 4138496 (+) True G106814
TU122634 other downstream 1103990 4744168 ~ 4745586 (+) True G107922

Expression Profile