RNA id: TCONS_00028040


Basic Information

Item Value
RNA id TCONS_00028040
length 651
lncRNA type retained_intron
GC content 0.43
exon number 3
gene id XLOC_014059
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 24039830 ~ 24065522 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAATTTTCTAACATCAAatatttaaacatcatttgcatcGATACAAAAGTCCCAATGGAGACAGGGATCCTGTGACACAGgTGTGTGTTACAGTAGTTTGGATGGAGTCCTCGCGGAGCACAGTGGGTCACTCCCGCGAGTACAAACTGGTGATGTTAGGAGAGGGAGGTGTGGGAAAAAGTGCCATCATCATGCAGTTTATAAGTCACAGGTTTCCAGAGGACCATGACCCTACCATTGGTAAGAAAGacctgatatgtttttttttttttattatttgcaatcaATTTTTCCAATCAATTCCTGTGGCTACACATCTCAGgattaagggcgtactcacactatgtacagttgccttaaaccggGCCGAAGCCTGCTTgttccccctcccgtctcccccgacggcccgcactcacattacattcgggcctgggcacgcttaaaTCATCGATAATGCACTTATTAGTAAGTGCTCAGCACAggggagatttctttagttatattgttttagccGTTTGGGATGCGGTAACACaaagtcaaatatttttaatatattttaacagatcagccacttttgacgcgcATAAAGTCCTCGTGTTGCAGGAATTAGTTCAGTTTGCAGTTTGCTAGAATcagtttgctgaaggtgca

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0007265 Ras protein signal transduction biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005516 calmodulin binding molecular_function
GO:0005525 GTP binding molecular_function
GO:0019003 GDP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko03016 Transfer RNA biogenesis
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-070912-329 Predicted to enable GTPase activity; calmodulin binding activity; and guanyl ribonucleotide binding activity. Acts upstream of or within embryonic viscerocranium morphogenesis and heart development. Predicted to be located in membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in Noonan syndrome 8. Orthologous to several human genes including RIT1 (Ras like without CAAX 1).

Ensembl:

ensembl_id ENSDART00000144541

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029905 lncRNA upstream 122753 23912228 ~ 23917095 (+) True XLOC_014054
TCONS_00029719 lncRNA upstream 946739 23091241 ~ 23093109 (+) False XLOC_014046
TCONS_00029718 lncRNA upstream 946739 23091241 ~ 23093109 (+) False XLOC_014046
TCONS_00029903 lncRNA upstream 946830 23085107 ~ 23093018 (+) False XLOC_014046
TCONS_00029904 lncRNA upstream 946830 23091283 ~ 23093018 (+) True XLOC_014046
TCONS_00028043 lncRNA downstream 24956 24072222 ~ 24074655 (+) True XLOC_014060
TCONS_00028045 lncRNA downstream 30669 24077935 ~ 24092309 (+) False XLOC_014061
TCONS_00028044 lncRNA downstream 30669 24077935 ~ 24092309 (+) False XLOC_014061
TCONS_00029906 lncRNA downstream 30722 24077988 ~ 24223669 (+) False XLOC_014061
TCONS_00029907 lncRNA downstream 30777 24078043 ~ 24096488 (+) True XLOC_014061
TCONS_00028038 mRNA upstream 5138 23982466 ~ 24034710 (+) True XLOC_014058
TCONS_00028037 mRNA upstream 69162 23932259 ~ 23970686 (+) True XLOC_014057
TCONS_00028036 mRNA upstream 117353 23919096 ~ 23922495 (+) True XLOC_014056
TCONS_00028027 mRNA upstream 727230 23298037 ~ 23312618 (+) False XLOC_014050
TCONS_00028030 mRNA upstream 729255 23308419 ~ 23310593 (+) True XLOC_014050
TCONS_00028041 mRNA downstream 20957 24068223 ~ 24074834 (+) False XLOC_014060
TCONS_00028042 mRNA downstream 20993 24068259 ~ 24075097 (+) False XLOC_014060
TCONS_00028046 mRNA downstream 277701 24324967 ~ 24392370 (+) False XLOC_014062
TCONS_00028047 mRNA downstream 326930 24374196 ~ 24392167 (+) True XLOC_014062
TCONS_00028048 mRNA downstream 347294 24394560 ~ 24399838 (+) True XLOC_014064
TCONS_00028035 other upstream 126548 23913182 ~ 23913300 (+) True XLOC_014055
TCONS_00028032 other upstream 385134 23652399 ~ 23654714 (+) False XLOC_014053
TCONS_00028033 other upstream 385134 23652781 ~ 23654714 (+) False XLOC_014053
TCONS_00028034 other upstream 385134 23653700 ~ 23654714 (+) True XLOC_014053
TCONS_00028031 other upstream 398517 23637789 ~ 23641331 (+) True XLOC_014052
TCONS_00028062 other downstream 1128006 25175272 ~ 25175392 (+) True XLOC_014081
TCONS_00028068 other downstream 1461527 25508793 ~ 25511562 (+) True XLOC_014083
TCONS_00028073 other downstream 2145556 26192822 ~ 26192936 (+) True XLOC_014087
TCONS_00028077 other downstream 2529328 26576594 ~ 26576708 (+) True XLOC_014090
TCONS_00028082 other downstream 2758500 26805766 ~ 26805882 (+) True XLOC_014093

Expression Profile

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