RNA id: TU120652


Basic Information

Item Value
RNA id TU120652
length 323
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G106611
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3704503 ~ 3704936 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCAACACTGATCCAACGATCAATGTTTCAACGATCAATGTGTCAACACTGATTCAACGATCAATGTTTCAACGATCAATGTCAACACTGATTCAACGATCAATGATTCAACGATCAATGTCAACACTGATTCAACGATCAATGTTTCAACGATCAATGTCAACACTGATTCAACGATCAATGTTTCAACGATCAATGTCAACACTGATTCAGCGATCAATGTTTCAACGATCAATGTCAACACTGATTCAACGATCAATGTTTCAACGATCAATGTCAACACTGATTCAACGATCAATGTTTCAACGATCAATGTCAACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120634 lncRNA upstream 22323 3681897 ~ 3682180 (+) True G106597
TU120619 lncRNA upstream 26653 3676265 ~ 3677850 (+) False G106595
TU120660 lncRNA downstream 10275 3715211 ~ 3715836 (+) True G106616
TU120661 lncRNA downstream 12066 3717002 ~ 3721341 (+) True G106617
TU120673 lncRNA downstream 21881 3726817 ~ 3728882 (+) True G106625
TU120679 lncRNA downstream 36653 3741589 ~ 3742013 (+) True G106630
TU120695 lncRNA downstream 58951 3763887 ~ 3764447 (+) True G106642
XM_036935245.1 mRNA upstream 282404 3407187 ~ 3422099 (+) False mboat1
XM_036935236.1 mRNA upstream 282404 3407190 ~ 3422099 (+) False mboat1
XR_005034605.1 mRNA upstream 724310 2978813 ~ 2980193 (+) False LOC118937337
XM_036935433.1 mRNA downstream 345847 4050783 ~ 4065607 (+) True colec10
XM_036935438.1 mRNA downstream 361056 4065992 ~ 4085680 (+) True mal2
XM_036935442.1 mRNA downstream 408186 4113122 ~ 4119742 (+) True LOC110507036
XM_036935488.1 mRNA downstream 531944 4236880 ~ 4302536 (+) False deptor
XM_036935491.1 mRNA downstream 531948 4236884 ~ 4302536 (+) False deptor
TU120618 other upstream 26653 3676265 ~ 3677850 (+) False G106595
TU120313 other upstream 217374 3367205 ~ 3487129 (+) False mboat1
TU120329 other upstream 217374 3367205 ~ 3487129 (+) False mboat1
TU120299 other upstream 278548 3367205 ~ 3425955 (+) False mboat1
TU120034 other upstream 313470 3206797 ~ 3391033 (+) True G106253
TU120871 other downstream 322139 4027075 ~ 4027594 (+) True G106775
TU120937 other downstream 432877 4137813 ~ 4138496 (+) False G106814
TU120940 other downstream 432877 4137813 ~ 4138496 (+) True G106814
TU122634 other downstream 1039232 4744168 ~ 4745586 (+) True G107922
TU122673 other downstream 1103803 4808739 ~ 4811575 (+) True G107955

Expression Profile