RNA id: TU120698


Basic Information

Item Value
RNA id TU120698
length 480
lncRNA type intronic
GC content 0.42
exon number 2
gene id G106645
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 3776115 ~ 3776747 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATCAGAGATATACAGGGACCAGTAGCTAGCTATTagagagaacaacaacaacacacatcagaGATATACAGGGACCAGTAGCTAGCTATTagagagaacaacaacaacacacatcagaGATATACAGGGACCAGTAGCTAGCTATTAGAGAGAACAACACACATCAGAGACATACAGGGACCAGTAGCTAGCTATTagagagaacaacaacaacacacatcagaTATATACAGGGACCAGTAGCTAGCTATTAGAGAGaacaacaacacacatcagaTATATACAGGGACCAGTAGCTAGCTATTAGAGGGAACAACACACATCAGAGACATACAGGTGCCAGTAGCTAGCTATTAGAgagaacaacaacacacagagatatacagggaCCAGTAGCTAGCTATTAGAGGGAACAATCCTCTGGCTAGATCATCCACATACAATTAGACAAGAGTatttatcccaaatggcaccctat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120695 lncRNA upstream 11668 3763887 ~ 3764447 (+) True G106642
TU120679 lncRNA upstream 34102 3741589 ~ 3742013 (+) True G106630
TU120673 lncRNA upstream 47233 3726817 ~ 3728882 (+) True G106625
TU120661 lncRNA upstream 54774 3717002 ~ 3721341 (+) True G106617
TU120660 lncRNA upstream 60279 3715211 ~ 3715836 (+) True G106616
TU120701 lncRNA downstream 2943 3779690 ~ 3781177 (+) True G106647
TU120704 lncRNA downstream 19479 3796226 ~ 3798842 (+) True G106649
TU120710 lncRNA downstream 29877 3806624 ~ 3808552 (+) True G106654
TU120719 lncRNA downstream 35780 3812527 ~ 3816515 (+) True G106656
TU120724 lncRNA downstream 43042 3819789 ~ 3822277 (+) False G106659
XM_036935245.1 mRNA upstream 354016 3407187 ~ 3422099 (+) False mboat1
XM_036935236.1 mRNA upstream 354016 3407190 ~ 3422099 (+) False mboat1
XR_005034605.1 mRNA upstream 795922 2978813 ~ 2980193 (+) False LOC118937337
XM_036935433.1 mRNA downstream 274036 4050783 ~ 4065607 (+) True colec10
XM_036935438.1 mRNA downstream 289245 4065992 ~ 4085680 (+) True mal2
XM_036935442.1 mRNA downstream 336375 4113122 ~ 4119742 (+) True LOC110507036
XM_036935488.1 mRNA downstream 460133 4236880 ~ 4302536 (+) False deptor
XM_036935491.1 mRNA downstream 460137 4236884 ~ 4302536 (+) False deptor
TU120618 other upstream 98265 3676265 ~ 3677850 (+) False G106595
TU120313 other upstream 288986 3367205 ~ 3487129 (+) False mboat1
TU120329 other upstream 288986 3367205 ~ 3487129 (+) False mboat1
TU120299 other upstream 350160 3367205 ~ 3425955 (+) False mboat1
TU120034 other upstream 385082 3206797 ~ 3391033 (+) True G106253
TU120871 other downstream 250328 4027075 ~ 4027594 (+) True G106775
TU120937 other downstream 361066 4137813 ~ 4138496 (+) False G106814
TU120940 other downstream 361066 4137813 ~ 4138496 (+) True G106814
TU122634 other downstream 967421 4744168 ~ 4745586 (+) True G107922
TU122673 other downstream 1031992 4808739 ~ 4811575 (+) True G107955

Expression Profile