RNA id: TU120871


Basic Information

Item Value
RNA id TU120871
length 520
RNA type TUCP
GC content 0.40
exon number 1
gene id G106775
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4027075 ~ 4027594 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatctcagacgatacgaaagagaggttgaacaggctaggggttgcaacaattttgcggataattttagaaagagagggtccagattgtttagcccggctgatttgtaggggtccagattttgcatctctttcagaacatcagctatctggatttgggtgaaggagaaatgggggatgcTTGGGCAAGTTCCTGTCGGGGGTGCattgctgttgaccggggtaagggtagccaggtggaaagcatggccagccgtagacaaatgcttattgaaattctcaattatcatggatttatcggtggtgacagtgtttcctagcctcagtgcagtgggcagctgggagggggtgctcttattctccatggactttacagtgtcccagaacttttttgagtttgtgctacaggatgcaaatttctgtttgaaaaagctagcctttgctttcctaactgcctgtgtatattggttcctaacttccctgaaaagttgcatatcgcgggggctattcgatgctaatgcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120869 lncRNA upstream 1223 4025592 ~ 4025852 (+) True G106773
TU120858 lncRNA upstream 14536 4012139 ~ 4012539 (+) True G106764
TU120854 lncRNA upstream 18652 4007937 ~ 4008423 (+) True G106761
TU120848 lncRNA upstream 33465 3993333 ~ 3993610 (+) True G106755
TU120814 lncRNA upstream 33802 3992104 ~ 3993273 (+) True G106727
TU120888 lncRNA downstream 19113 4046707 ~ 4047624 (+) True G106790
TU120891 lncRNA downstream 26672 4054266 ~ 4054652 (+) True G106793
TU120893 lncRNA downstream 49684 4077278 ~ 4083492 (+) True G106795
TU120895 lncRNA downstream 68102 4095696 ~ 4096869 (+) True G106797
TU120930 lncRNA downstream 110219 4137813 ~ 4138496 (+) False G106814
XM_036935245.1 mRNA upstream 604976 3407187 ~ 3422099 (+) False mboat1
XM_036935236.1 mRNA upstream 604976 3407190 ~ 3422099 (+) False mboat1
XR_005034605.1 mRNA upstream 1046882 2978813 ~ 2980193 (+) False LOC118937337
XM_036935433.1 mRNA downstream 23189 4050783 ~ 4065607 (+) True colec10
XM_036935438.1 mRNA downstream 38398 4065992 ~ 4085680 (+) True mal2
XM_036935442.1 mRNA downstream 85528 4113122 ~ 4119742 (+) True LOC110507036
XM_036935488.1 mRNA downstream 209286 4236880 ~ 4302536 (+) False deptor
XM_036935491.1 mRNA downstream 209290 4236884 ~ 4302536 (+) False deptor
TU120569 other upstream 226723 3639434 ~ 3800352 (+) True G106575
TU120618 other upstream 349225 3676265 ~ 3677850 (+) False G106595
TU120313 other upstream 539946 3367205 ~ 3487129 (+) False mboat1
TU120329 other upstream 539946 3367205 ~ 3487129 (+) False mboat1
TU120299 other upstream 601120 3367205 ~ 3425955 (+) False mboat1
TU120937 other downstream 110219 4137813 ~ 4138496 (+) False G106814
TU120940 other downstream 110219 4137813 ~ 4138496 (+) True G106814
TU122634 other downstream 716574 4744168 ~ 4745586 (+) True G107922
TU122673 other downstream 781145 4808739 ~ 4811575 (+) True G107955
TU122792 other downstream 830317 4857911 ~ 4858274 (+) True G108048

Expression Profile