RNA id: TCONS_00028046


Basic Information

Item Value
RNA id TCONS_00028046
length 6640
RNA type mRNA
GC content 0.39
exon number 15
gene id XLOC_014062
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 24324967 ~ 24392370 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctgctgtggcaacacctgataaataaagggactaagctaaaagaaaataagatattgaatcaatgaataataataatgcctcTTGATGATTTAAGAAAACTGAACATTTACAGCAATGGTGGGCTATTGATATAGTATTGAGGATGgtttttgtcaaaattattattattatacaaaataaaaaaaatcagacatatcTTGACTTAGACTGAGtaaattaaacttatttttttaaataaatgtaatatcaaACATAATATTCACATGACCTTTTCTATtgtataaaagttttaaataataaacgtTATTAGGATTATTATAAGGTATCTCactataaaaaaatagatatcttCTAAAAAACGTTCTTTTGTGGATCTTAAAAGGATTATTCTACATGGAATTTATGGCAACCCCTTTTGAAGACtttgtatttgattttattttttctctctttttacggCTAGATGGCGCTGTTGTATAGTGTAGGTGAAGCGTTTTTGGCTTTGCTGCCGTCTACCCGTGGGCAAAACGGCGTTTACTTATCAACAGCGTGGAAACAATAGAGAGAAGCAAGCTTTTACATGAAGACGAGCTGCTTATAAAAAAACGAGTTACTAACGTGTTACTAACCACAGACTCTGCGCTTCAGAGTTCCCATTATCTGGAGTACCAGCGTCATCTGGGAGTTCGTCAGAAATTGTTGTAACCTACACAAACGAGAGACTATCATAACAACGCTGGAGCCAAACATAACAGATCCAGGAGAAGCACATTTTGATATGAGATGACGGCAGACTCCTTTGGCTGTTTGAAGTGGTGTCTTTGTGGGCGACTCAGTGCTGAACGGACGCCAACAGAAGGAAACAGAGACAGATAGACCAGTATTTGGAATCAGCTTATCTGTTTTCCTCCTGGCCTCCTGGTTTTCCATCAGGATGGTGATTTCGGCATCACTTTGTGCCTGTGTGTTTCTTCTGACTGCCGTCAGGTGTCATTCTCATGTCCTCCCCCGACTCTCTTTTCCAATGGGTAGTCCAGGTCGCTCTCTCACCGTCTTCACAAATGATGATAGTTACAACGCCACCACATTGTTGCTTAGCAACGATGAGGGCACCTTATTTGTTGGAGCACGTGATACCATTCTGTCAATCAACATCAGTCAGACTGATATGACATTGAAGGAGAAGCTGGACTGGTCTCCCTCAGAAAAAGACTTTAATGATTGTTCCATGAAAGGCAAATTGAAGATGGATTGTCATAACTTTGTGAGAGTTTTGCAAGTGCTGAACTCTACACATATGTACGCCTGTGGAACGTTTGCCTTCAGCCCTCGTTGTATCTACATTAATTCACAGACATTCACCATGGTTACAGGACCCAGCGGTAAACCTGAAGAAGGCAGAGGCCGCTGTCCTTATGACCCATATCAGAAGAATTCAGCCATAACTGTGGATGGGGAACTGTATACAGGAACTGTGTCAGACTTCAGAGGAACTCGACCTGTCATTTCACGGCACTTGAGTGAGGGCAGCCATGTTGATCTGAAACTGGATGATACACTTGGATGGTTAGAAGaTCCTACTTTCATCAGCTCCACATATATTCACAGTGAGGAGAAGGTTTATTTCTTCTTCAGTGAGATTGGAAAAGAATACGACTTCATTGACAAGTTTACGGTGTCTCGCGTTGCCCAAGTTTGCACAAGTGATGTTGGTGGGCAGAGAACTTTACAGAAACGCTGGACCACCTTTGCCAAGGCTCAGCTATTGTGTCAAGCTGACCAAGAGCTGCCATACAACGTTCTGCAGGACGTTATCAGCCTTtctccaccagagggcgcatCTGAGGATGAAACACTCTTCTATGGGATTTTCACTTCTCAGTGgcgAGTAAACTTGGGTCGCTCAGCCGTGTGTGCTTTCAGCCTCAAAGACattaaaaaggtgtttacaggACGTTATAAGGTTCTGAATCGGGATACTCTGAAATGGAGCACAAGGGTGCAGGAGCAGATGGCAAACCCTGGAGAGTGTGGACTGCACAATGCTTCAGACAACACTCTGCGCTTTGTTAAGGACAATTTCCTGGCTGATAAAAGTGTTCTACCAGTCAATCAGGGCCTGACAGTGGTGTCACCTGATAAGAGCTACAGCAACATCGCAGCTCAGAGAGTACAAGGAGCACGCGGCAAATATTACACTGTGCTTTATCTGCTTACAGAGTCAGGCTTCCTGCACAAAACTGTGCTCTTGAAGAAGGGAGCTCACATCATCGAGGAGATACAAGTGTTTCATCAACCTCAGATGGTCAAAAGCCTCCTTCTGTCTGTTTCTAAGGGGGCAGTGCTGATCGGCTCTTCAGAAGGGCTGCTGTCAGTGCCAGTGTCCAACTGCTCTCACTACAGGAGCTGTGCTGAATGTGTTCTGGCCAGAGACCCTTTCTGTGGCTGGGACCTTTCCCAGAGGGTCTGCAAACTGATAACCACATCACAGAATCAGCTGGCTCAGGATGTAGATGAGGGTAAAGTATCAGAGCAGTGCTCCAGTGTGAACCTCAGATCCCGCTCTGGCCAGCCCCAAAACACCCAGAGTGAAGTGCTGTCTGTGTCACTCAATGAGGTTATTAACCTACAATGCCCCGAAGCATCAAACCTTGCTAAATGCCACTGGGAGCGTCTCAACAGCCAGCTCTCCCCCAAAATCTTCATCCAGTCAGTCAACGGCAGCCTCAGCTTTGTGGCGACCCCGTCCACCCTGGGCCACTACCTGTGCCAAGCGGTGGAGAACGGCTACACCCAAACACTGATAGTCTACCATATTAAACAGAAGAACAATCCCACCATCCTCCCGTCTTCCCCGAAGATCACACCGACTTCCGCTGAAGCTGGAAACAAAACCCCTTTTTCCACTCCCACAGCTCCCAAACACACCGAGCTGAGGCCTAAACCAGAAGACCCAAGTTCTACTGTTGCACACAAAGATTCACCTGCAACCACCACACGGAAAAGCAAAAACTTCACTCCCTTGATTAGTGCAGAAGAGGAAAGCTCCTGGATGAATGAACGCAGTGGAAACTTCAAGCAAGTGGATAAACCAACCTATTTGCAGGAGCTAGTAGTGGTGTCCGTTCTGCTAGCGCTGTGTGTTAGCGCCTTGCTAACCATCGCTTTTAACAGATTTAGACATGTTTGCACCAGCAGGACCATCGCACAAACTCCTTGCTCTCGCAGGGACGTTGAGAAGGGTGGAAGTGCGACACCGCAAGAGAGGGAGTCTCTCAGAGGACATTCACCACGTTTGGAAAAGCGCAATGGACAAGCTCCTAATGGACAGTCCCACATTGGTCAGGCACATAACGGCAAATCTTCAATCACACTGAGCAATAACATGCTGAACGGCTCTAACGGTCACCTGCCCAACACACCCATCTGATGGTGCTGGTTTTCTTGATTTACTGGAAAACTCTTTTCTGAGCCAAATCGGGCTTTTGCTGAATCAAGCCCTGTCGCTGAACCACTCATGCAGGATCATTTCGAAATCTAAGAGgagagaaataaagtcagaaacTGCACACTGGACCTGCTCATAAATCATTTGAGCCGTAAGACTAAAAGATCTTCAgcactaggaactagtgtacaTTTTCAGTTTGTTAATATTTAAGCTGTAATTTATGTGTAAACTGAACTGTTCGTTTCAGTCTAAAGTATATCAGATGTTATGCCTCTCTTAAAGAAACACTTCCACTTTTTTTggaataggctcattttacaagaaaACAGTCGAGTTTTAGCAATTTTAATCCACTCAGCCGATCTCTTGAGCGCTtcgcttagcataaataattgaaccggattagcatcttgctcaaaaaagtTCACCTAGTTATCCAGCTGGGGACTTTTTTCAGCTGCTGCATAATATAATTGCACTTGCTGCAACTTTTTTTTCATCGGTCTTACACAATTGAGctacacacataaactacagaaATAGGaaaatttaaacttttttggagcaagatgctaatggtctaatcctattcaatgaattatgctaagctaaggtaAAAGTTGCCAGctgatcagctgaatggattaaaaaattgtCAATCTTAACTTTTTAAGTCTAGGGGAGttataaaatgagcctattacaaaagaaaaaaagtggatTGTTTCTTTAAACCACTTTCAGGCAAGTTCAAATGACAGTTTAAGATTTCCATTGAactttttgatatttttattgattttagaaACAGTTAGagtcattttatattataaactTTATGGCTCTAATCATATGATCGTTTTCAAAATCCtattttccattttgcaaacatttAGTTTCCAGTACTCACTCTCTCCACCTTTTTCAGAGTCGCTATATCGCACATCTTTCTTAGTCTTTGCCTTTGTTTCTTATTCTTGTCTAATTTCACATTTTGAATGTCAAAACGAGGTACGATAGTTAGGTTTTCTGTTTTCCATAAcaggatagtttactcaaaaatgaaacttaaacttttaataaaagtTAGAATTGAGTATAGATCCAGCCATCAATAGTGTAGGACATTTTTCCTTTCAGTAGAATATCGAAggattttagctgaaactgtggtccttgaTGATTCATAAAATCCAATACTGTTGCTGCTGGCAATTTGAgaatcaacaaaaataaatacatgagcaTAATTAAATGAACAGCCATGATGATACATTTCTGATAATGCATTGTAAAGCTGAGCAATCTTCTTTACTAATGACTGTCATAAATACACAGAGGCTGTGTATTaaaggtaatttttttatttacttgtgacTTCTATGAATCACAAAAGAGCATGGTTTCAGCCAAAAATACTCCTTAATCCTCTGCTGAAATAAAAAATCACCTACATCTCAGATGGCCTAAGGTTGAGTAAATAAGCAGCTTTGGTTTTCATAGACTTCCATTAGAATTGACAGTCTGTGGGAACTGAAACTATTTGGTTACCAGCAGTTTGGTTtcaaattattttcatttgtgaTGCAGTATTTTTGTTTCTATTTATGGAAGCTTGTAACAAAGGTAATTGGGGTATTTATCTCAGTTCTGACATTATTCTCTCAGAATTTTGTGGTATGAAAGCACATTTGCTTGGTTAGACAGTCTTTCAAGATAAATATGCATAATTGTGAAACAAATTAGAAGAtaaatatttagaatttgcagATATAAGTCTACAATTCTTACTTTTCCACTCTGATTCACAATTCTTTCCTCAAATTTGTTATTATAAACttgaattgtgagttataaaatCCAGAACTCAGATAAAATACTGACAAGTTTATCTCTCACAACGAAGGTCTCAAGTgtggaaaatgtttaaaaaaaattcagataaaaaattgcaattacctttatttttaattggtggtggaaacaagcttccatatgaaggtgaataaataacacattttcttttttaagctGACTATCCCCTTTACCATAGCACCAGGGCAGAAATGAAGCTTTCAAATGTGCTTTTCAAgtgttttaatttaagttttctGTGTAATGctgatcatttaatttaattgtaaagtTGTGTTGATCAGTTGTGTACTGTACAAGTACGGGTAGATGTTGTTGtcttttacatttcaaaattatatcaatataaaaataatgagGAGTGTTACTTTGGTACCATGGACCTGTTCTAGAAGTATGTAGCCTGCTCACCTCATTCAATGTTGACCACTTGACTGTGTCATAATGGCAAAACACAGTGACTTTGACtttaattttattcagtttttacactgaTAATTGAACCAAATCAATCTGTCGGAGAACAGAATCTAGGTTTAAATTTAGGTGGGAAAAAAgatataatgacaaaaaaaatatggGTTGTTGCTGTGTTTTGTCTTGGTACAGTAATATTCTGGCCGTGGTTGCAGCTACTTTCACTATAGAGTGTTCGAATCGAATCATTTGTCGTTTTTCCACTGAATGGTACTAATGTGAAGTCTTCATGTAGGAGAAATTAATGATAAATTGTGATATATTGCCAAATATGTGTTTTATAATCAAATGATGAGGACCTGTTCTTTTTAGTGGATCAAAGAACAGCTGAATTTTCCTGTTTGTCTTTCGCTTGGATTTCAGAGTCCAGTCGAAGCCCAATATGTGAAGTCTGTCACAGGACTAGATGCTCTCCTGCACACCACTGTTTTTGAAagattctgtttatttttttatagcctAAACAGgctgttttgaaaataaaaatattgatttaaagtgTTTGAAATGCAAGTTTCTTTAAAACATAGTTGTTTTTATTTCCACCAGATGGCATCAGAATCATTGTTTCATTTACGTGGAGTCAATACTCAAGGCAATTCACAGCCAATacaaagtgatggtgtttaaaaATGCGTCTCTATTGTAAGTGCGCTCTATCTTTGCCAAAGTAAACAAAGTAAATGAAATTGGACTACTGGTCAAATATTAGAGTAATTAAGTTTCAATTCTTTTTTAATGTACAGAAATCAAATACAAACATGCTGATTTAATGCAAAGTTATAAGACAACAGATTAGAAAATATTTGTCCGCTACTTAATTTTGTGGAAATGTG

Function

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0050919 negative chemotaxis biological_process
GO:0048843 negative regulation of axon extension involved in axon guidance biological_process
GO:0007411 axon guidance biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0071526 semaphorin-plexin signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0045499 chemorepellent activity molecular_function
GO:0030215 semaphorin receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-363 Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in cone-rod dystrophy 10 and retinitis pigmentosa 35. Orthologous to human SEMA4A (semaphorin 4A) and SEMA4B (semaphorin 4B).

Ensembl:

ensembl_id ENSDART00000090081

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029906 lncRNA upstream 101298 24077988 ~ 24223669 (+) False XLOC_014061
TCONS_00029907 lncRNA upstream 228479 24078043 ~ 24096488 (+) True XLOC_014061
TCONS_00028045 lncRNA upstream 232658 24077935 ~ 24092309 (+) False XLOC_014061
TCONS_00028044 lncRNA upstream 232658 24077935 ~ 24092309 (+) False XLOC_014061
TCONS_00028043 lncRNA upstream 250312 24072222 ~ 24074655 (+) True XLOC_014060
TCONS_00029908 lncRNA downstream 55651 24448021 ~ 24449198 (+) True XLOC_014065
TCONS_00029909 lncRNA downstream 98345 24490715 ~ 24492326 (+) True XLOC_014066
TCONS_00028050 lncRNA downstream 176995 24569365 ~ 24573197 (+) True XLOC_014067
TCONS_00029910 lncRNA downstream 207658 24600028 ~ 24604330 (+) True XLOC_014070
TCONS_00029911 lncRNA downstream 364482 24756852 ~ 24758083 (+) True XLOC_014071
TCONS_00028042 mRNA upstream 249870 24068259 ~ 24075097 (+) False XLOC_014060
TCONS_00028041 mRNA upstream 250133 24068223 ~ 24074834 (+) False XLOC_014060
TCONS_00028039 mRNA upstream 259445 24039830 ~ 24065522 (+) False XLOC_014059
TCONS_00028038 mRNA upstream 290257 23982466 ~ 24034710 (+) True XLOC_014058
TCONS_00028037 mRNA upstream 354281 23932259 ~ 23970686 (+) True XLOC_014057
TCONS_00028048 mRNA downstream 2190 24394560 ~ 24399838 (+) True XLOC_014064
TCONS_00028049 mRNA downstream 96033 24488403 ~ 24492326 (+) False XLOC_014066
TCONS_00028051 mRNA downstream 182707 24575077 ~ 24589243 (+) True XLOC_014068
TCONS_00028052 mRNA downstream 203954 24596324 ~ 24597277 (+) True XLOC_014069
TCONS_00028053 mRNA downstream 479789 24872159 ~ 24887679 (+) False XLOC_014074
TCONS_00028035 other upstream 411667 23913182 ~ 23913300 (+) True XLOC_014055
TCONS_00028032 other upstream 670253 23652399 ~ 23654714 (+) False XLOC_014053
TCONS_00028033 other upstream 670253 23652781 ~ 23654714 (+) False XLOC_014053
TCONS_00028034 other upstream 670253 23653700 ~ 23654714 (+) True XLOC_014053
TCONS_00028031 other upstream 683636 23637789 ~ 23641331 (+) True XLOC_014052
TCONS_00028062 other downstream 782902 25175272 ~ 25175392 (+) True XLOC_014081
TCONS_00028068 other downstream 1116423 25508793 ~ 25511562 (+) True XLOC_014083
TCONS_00028073 other downstream 1800452 26192822 ~ 26192936 (+) True XLOC_014087
TCONS_00028077 other downstream 2184224 26576594 ~ 26576708 (+) True XLOC_014090
TCONS_00028082 other downstream 2413396 26805766 ~ 26805882 (+) True XLOC_014093

Expression Profile

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