RNA id: TU120895


Basic Information

Item Value
RNA id TU120895
length 250
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G106797
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4095696 ~ 4096869 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gataccacattctatagactcttccattctaaagataccacattctatagatccttccattgtaaagataccacattctatagatccttccattgtaaagataccacattctatagactcttccattgtaaagataccacattctatagatccttccattgtaaagataccacattctatagatccttccattgtaaagataccacattctatagactcttccattgtaaagataccacattctatagat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120893 lncRNA upstream 12204 4077278 ~ 4083492 (+) True G106795
TU120891 lncRNA upstream 41044 4054266 ~ 4054652 (+) True G106793
TU120888 lncRNA upstream 48072 4046707 ~ 4047624 (+) True G106790
TU120869 lncRNA upstream 69844 4025592 ~ 4025852 (+) True G106773
TU120858 lncRNA upstream 83157 4012139 ~ 4012539 (+) True G106764
TU120930 lncRNA downstream 40944 4137813 ~ 4138496 (+) False G106814
TU120939 lncRNA downstream 40944 4137813 ~ 4138496 (+) False G106814
TU120968 lncRNA downstream 70851 4167720 ~ 4168317 (+) True G106831
TU120915 lncRNA downstream 89949 4186818 ~ 4189033 (+) True G106806
TU120978 lncRNA downstream 108571 4205440 ~ 4206012 (+) True G106841
XM_036935438.1 mRNA upstream 10016 4065992 ~ 4085680 (+) True mal2
XM_036935433.1 mRNA upstream 30089 4050783 ~ 4065607 (+) True colec10
XM_036935245.1 mRNA upstream 673597 3407187 ~ 3422099 (+) False mboat1
XM_036935236.1 mRNA upstream 673597 3407190 ~ 3422099 (+) False mboat1
XR_005034606.1 mRNA upstream 1115503 2978829 ~ 2980193 (+) False LOC118937337
XM_036935442.1 mRNA downstream 16253 4113122 ~ 4119742 (+) True LOC110507036
XM_036935488.1 mRNA downstream 140011 4236880 ~ 4302536 (+) False deptor
XM_036935491.1 mRNA downstream 140015 4236884 ~ 4302536 (+) False deptor
XM_036935497.1 mRNA downstream 140182 4237051 ~ 4302536 (+) False deptor
XM_036935484.1 mRNA downstream 140186 4237055 ~ 4302536 (+) False deptor
TU120871 other upstream 68102 4027075 ~ 4027594 (+) True G106775
TU120569 other upstream 295344 3639434 ~ 3800352 (+) True G106575
TU120618 other upstream 417846 3676265 ~ 3677850 (+) False G106595
TU120313 other upstream 608567 3367205 ~ 3487129 (+) False mboat1
TU120937 other downstream 40944 4137813 ~ 4138496 (+) False G106814
TU120940 other downstream 40944 4137813 ~ 4138496 (+) True G106814
TU122634 other downstream 647299 4744168 ~ 4745586 (+) True G107922
TU122673 other downstream 711870 4808739 ~ 4811575 (+) True G107955
TU122792 other downstream 761042 4857911 ~ 4858274 (+) True G108048

Expression Profile