RNA id: TU120930


Basic Information

Item Value
RNA id TU120930
length 531
lncRNA type intronic
GC content 0.37
exon number 4
gene id G106814
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4137813 ~ 4138496 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAATTAGACAACTGTTCAAATTAGCAGTCAACATAAAGTATTGACGAGGTATGTACCAGTCCATGTTGAAATGAGTAGTCAACATAAAGTATTGACGAGGTATGTACCAGTCCATGTTGAAATGAGTAGTCAGTATAAAGTATTGACGAGGTATGTACCAGTCCATGTTGAAATGAGTAGTCAACATAAAGTATTGACGAGGTATGTACCAGTCCATGTTGAAATGAGTAGTCAACATAAAGTATTGACGAGGTATGTACCAGTCCATGTTGAAATGAGCAGTCAACATAAAGTATTGACGAGGTATGTACCAGTCCATGTTGAAATGAGTAGTCAACATAAAGTATTGACGAGGTATGTACCAGTCCATGGGTTTATCTTGAGAGGATTATTGAAGGAGCTGTTTTCCCTTGTCAAACATCAGTTATAAACACAGTAAATAGCATATAGCTGATATCAAAATAAACCAGGCAGGAAACATGTAGGCTGTGTCCTGTTTGACATACCTGTTTGGAGACTGTGTAGAATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120895 lncRNA upstream 40944 4095696 ~ 4096869 (+) True G106797
TU120893 lncRNA upstream 54321 4077278 ~ 4083492 (+) True G106795
TU120891 lncRNA upstream 83161 4054266 ~ 4054652 (+) True G106793
TU120888 lncRNA upstream 90189 4046707 ~ 4047624 (+) True G106790
TU120869 lncRNA upstream 111961 4025592 ~ 4025852 (+) True G106773
TU120968 lncRNA downstream 29224 4167720 ~ 4168317 (+) True G106831
TU120915 lncRNA downstream 48322 4186818 ~ 4189033 (+) True G106806
TU120978 lncRNA downstream 66944 4205440 ~ 4206012 (+) True G106841
TU120979 lncRNA downstream 67539 4206035 ~ 4206534 (+) True G106842
TU120991 lncRNA downstream 79879 4218375 ~ 4218891 (+) True G106849
XM_036935442.1 mRNA upstream 18071 4113122 ~ 4119742 (+) True LOC110507036
XM_036935438.1 mRNA upstream 52133 4065992 ~ 4085680 (+) True mal2
XM_036935433.1 mRNA upstream 72206 4050783 ~ 4065607 (+) True colec10
XM_036935245.1 mRNA upstream 715714 3407187 ~ 3422099 (+) False mboat1
XM_036935236.1 mRNA upstream 715714 3407190 ~ 3422099 (+) False mboat1
XM_036935488.1 mRNA downstream 98384 4236880 ~ 4302536 (+) False deptor
XM_036935491.1 mRNA downstream 98388 4236884 ~ 4302536 (+) False deptor
XM_036935497.1 mRNA downstream 98555 4237051 ~ 4302536 (+) False deptor
XM_036935484.1 mRNA downstream 98559 4237055 ~ 4302536 (+) False deptor
XM_036935521.1 mRNA downstream 189487 4327983 ~ 4538057 (+) False col14a1a
TU120871 other upstream 110219 4027075 ~ 4027594 (+) True G106775
TU120569 other upstream 337461 3639434 ~ 3800352 (+) True G106575
TU120618 other upstream 459963 3676265 ~ 3677850 (+) False G106595
TU120313 other upstream 650684 3367205 ~ 3487129 (+) False mboat1
TU122634 other downstream 605672 4744168 ~ 4745586 (+) True G107922
TU122673 other downstream 670243 4808739 ~ 4811575 (+) True G107955
TU122792 other downstream 719415 4857911 ~ 4858274 (+) True G108048
TU123045 other downstream 997860 5136356 ~ 5136992 (+) True G108280
TU123151 other downstream 1157683 5296179 ~ 5299933 (+) True G108354

Expression Profile