RNA id: TU122049


Basic Information

Item Value
RNA id TU122049
length 1712
lncRNA type antisense_over
GC content 0.32
exon number 3
gene id G107562
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 4274524 ~ 4276335 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCGATAGAAACACAGTCTTCTATATAAGACTAGAGCCTGGATATCTAAAACACAGTCTTCTTCTATACAAGACTAGAGCCTGGATATCTGAAACAGTCTTCTTCTATACAAGACTAGAGCCTGGATATCTGAAACACAGTCTTCTATACAAGACTAGAGCCTGGATATCTGAAACACAGTCTTCTATACAAGACTAGAGCCTGGATATCTGAAACAGACTTCTTCTATACAAGACTAGAGCCTGGATATCTGAAACAGTCTTCTTCTATACAAGACTAAAGCCTGGATATCTGAAACACAGTCTTCTTCTATGGTTCTGTCCGTGTGACCACTAGTCACTGGTACCAATAGCAGTCCAGAACAGGCTGGTTCTGTCCGTGTGACCACTAGTCACTGGTACAGACAGCAGTCCAGAACAGGCTGGTTATGTCCGTGTGACCACTAGTCACTGGTACAGACAGCAGTCCAGAACAGGCTGGTTCTGTCCGTGTGACCACTAGTCACTAGTACAGACAGCAGTCCAGAACAGGCTGGTTCTGTCCGTGTGACCACTAGTCACTGGTACAGACAGCAGTCCAGAACAGGCTGGTTCTGTCCGTGTGACCACTAGTCACTGGTACCAATAGCAGTCCAGAACAGGCTGGTTCTGTCCGTGTGACCACTAGTCACTGGTACAGACAGCAGTCCAGTACAGGCTGGTTCTGTCCGTGTGACCACTAGTCACTGGTACAGACAGCAGTCCAGAACAGGCTGGTTCTGTCCGTGTGACCACTAGTCACTGGTACAGACAGCAGTCCAGAATAGGCTGGTTCTGTCCGTGTGACCACTAGTCACTGGTACAGACAGCAGTCCAGAATAGGCTGGTTCTGTCCGTGTGACCACTAGTCACTGGTACAGACAGCAGTCCAGAACAGGCTGGTTCTGTCCGTGTGACCACTAGTCACTGGTACCAATAGCAGTCCAGAACAGGCTGGTTCTGTCCGTGTGACCACTAGTCACTGGTACAGACAGCAGTCCAGTACAGGCTGGTTCTGTCCGTGTGACCACTAGTCACTGGTACAAACAGCAGTCCAGAACAGGCTGGTTCTGTCCGTGTGACCACTAGTCACTGGTACAGACAGCAGTCCAGAACAGGCTGGTTCTGTCCGTGTGACCACTAGTCACTGGTACCAATAGCAGTCCAGAACAGGCTGGTTCTGTCCACATGATACTGTTACCATTTACCTAAACTGAGGATCCAAAACACTCCCAAGTTTTTTTCCATGTGTTCTGGATAGTCAGTAGTTCCTGACCAGAACCTCAGTCTGGGGAGGAGAGGGTATCAGCACATTGAAGACACACTGCTGTGCACAGGGCTCCTATTCACACTCTTACCCcactgtggtttgtgtaaggtcaCTCAGGGAGAATGGTGACCCTCTTACcggactgtgctgtgtgtgtgtgtgtgtgagagtgtattAAGGTCACTCAGGGAGAATAGAGACCCTCTTACcggactgtggtgtgtgtgtgtgtgtgtgtttgagagagtgtATTAAGGCCTCTTACCTGACTTTGGGTTACAGAGCACCGGGGGGCTGCTACTGAGGGTGGGACTGCTGCTATAGTAACCACTGCTGCCACAGCTGCTGCTCATGCTGCTACGACGGATACCCACTATCATCTTGATCTCTTTAGTAGGActcactgagagaggagagagacaggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122039 lncRNA downstream 4471 4268201 ~ 4270053 (-) False G107560
TU122041 lncRNA downstream 4471 4268201 ~ 4270053 (-) False G107560
TU122043 lncRNA downstream 4471 4268201 ~ 4270053 (-) True G107560
TU122031 lncRNA downstream 11618 4261533 ~ 4262906 (-) False G107556
TU122032 lncRNA downstream 11618 4261533 ~ 4262906 (-) False G107556
TU122051 lncRNA upstream 546 4276881 ~ 4277334 (-) True G107563
TU122052 lncRNA upstream 1176 4277511 ~ 4278065 (-) True G107564
TU122053 lncRNA upstream 1824 4278159 ~ 4278476 (-) True G107565
TU122054 lncRNA upstream 2201 4278536 ~ 4278763 (-) True G107566
TU122057 lncRNA upstream 5434 4281769 ~ 4282850 (-) True G107568
XM_036935477.1 mRNA downstream 37732 4227282 ~ 4236792 (-) False dscc1
XM_036935472.1 mRNA downstream 38674 4227282 ~ 4235850 (-) False dscc1
XM_036935468.1 mRNA downstream 51320 4172703 ~ 4223204 (-) True taf2
XM_036935463.1 mRNA downstream 51331 4170743 ~ 4223193 (-) False taf2
XM_036935456.1 mRNA downstream 107500 4122312 ~ 4167024 (-) True enpp2
XM_036935578.1 mRNA upstream 299102 4575437 ~ 4602797 (-) False mrpl13
XM_036935588.1 mRNA upstream 310696 4587031 ~ 4602716 (-) True mrpl13
XM_036935603.1 mRNA upstream 385998 4662333 ~ 4740091 (-) False sntb1
XM_036935620.1 mRNA upstream 386180 4662515 ~ 4740068 (-) False sntb1
XM_036935598.1 mRNA upstream 386180 4662515 ~ 4740076 (-) False sntb1
TU121876 other downstream 281677 3991326 ~ 3992847 (-) True G107456
TU121654 other downstream 498346 3752561 ~ 3776178 (-) False LOC110506994
TU121655 other downstream 498346 3752561 ~ 3776178 (-) True LOC110506994
TU119712 other downstream 1789401 2483860 ~ 2485123 (-) True G106003
TU119710 other downstream 1791168 2482941 ~ 2483356 (-) True G106001
TU122066 other upstream 19090 4295425 ~ 4296815 (-) True G107574
TU122094 other upstream 21110 4297445 ~ 4300230 (-) False G107576
TU122340 other upstream 99587 4375922 ~ 4376423 (-) True G107755
TU122474 other upstream 262900 4539235 ~ 4539623 (-) True G107843
TU122481 other upstream 273978 4550313 ~ 4551965 (-) True G107849

Expression Profile