RNA id: TCONS_00029909


Basic Information

Item Value
RNA id TCONS_00029909
length 763
lncRNA type sense_over
GC content 0.35
exon number 2
gene id XLOC_014066
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 24488403 ~ 24492326 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTTTGATTCCCTATTCTCTTTGGAGGGGTTTCCTTTTTTCTTATTTCATTACGGACCATATCACGTTAGAATTTAAACTACAAAAGCAGTTGGTGTTCTAAccagagagatatatatatattgaatgtaAAGAAGATTTGTGGTATACCATACTCTTTTCATCAAGGGAAAAATCATACAGTGTCAGTTTGTCTTTGAACAGTGttgaggctgttttttttttttttctttttatttgaatgCACTTTTTATGGATGCAAGTTGCTGTGTAACTACTCCCAGGGAGATTTcctatgtttttctttttgtctttcttttgtcTTCCAAAATTGTTTAGGGATCAGGCATTGCAATCCCAACTCAAGACTGTactgtaatgcactcaaaacctTGTCCTAAGAAAGGGCTCCAGTGATGCTGTTTTTTCACTGTGGACTTGAGCATTAGGCCAAAAAAAGAGAACTCAACACTCCAAGTGCCAAAATTGGGGTCTGTTTGGACTTGAGCCCTGACCACGTTGATTTGTGAGACCAGAAGCTGCACTGTGTGCAGTTAATCCTGAAGACATTTTGATCAACATTTCACTTGTGGAGATCTTCCTGAAATttgttgattgtgtgtgtgtgttgttttgtttcttcACAGAGTgaaatattactgttattataaacagtgcaaaatgtgcaaatatcccttttttgtatgtaatttaaagagtttttgtatgagaattcatttttaataaaagttttaagatGTCA

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005737 cytoplasm cellular_component
GO:0031625 ubiquitin protein ligase binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029908 lncRNA upstream 41517 24448021 ~ 24449198 (+) True XLOC_014065
TCONS_00029720 lncRNA upstream 146057 24344005 ~ 24344658 (+) True XLOC_014063
TCONS_00029906 lncRNA upstream 267046 24077988 ~ 24223669 (+) False XLOC_014061
TCONS_00029907 lncRNA upstream 394227 24078043 ~ 24096488 (+) True XLOC_014061
TCONS_00028045 lncRNA upstream 398406 24077935 ~ 24092309 (+) False XLOC_014061
TCONS_00028050 lncRNA downstream 77039 24569365 ~ 24573197 (+) True XLOC_014067
TCONS_00029910 lncRNA downstream 107702 24600028 ~ 24604330 (+) True XLOC_014070
TCONS_00029911 lncRNA downstream 264526 24756852 ~ 24758083 (+) True XLOC_014071
TCONS_00029912 lncRNA downstream 265845 24758171 ~ 24760474 (+) False XLOC_014072
TCONS_00029913 lncRNA downstream 266345 24758671 ~ 24760474 (+) True XLOC_014072
TCONS_00028048 mRNA upstream 90877 24394560 ~ 24399838 (+) True XLOC_014064
TCONS_00028046 mRNA upstream 98345 24324967 ~ 24392370 (+) False XLOC_014062
TCONS_00028047 mRNA upstream 98548 24374196 ~ 24392167 (+) True XLOC_014062
TCONS_00028042 mRNA upstream 415618 24068259 ~ 24075097 (+) False XLOC_014060
TCONS_00028041 mRNA upstream 415881 24068223 ~ 24074834 (+) False XLOC_014060
TCONS_00028051 mRNA downstream 82751 24575077 ~ 24589243 (+) True XLOC_014068
TCONS_00028052 mRNA downstream 103998 24596324 ~ 24597277 (+) True XLOC_014069
TCONS_00028053 mRNA downstream 379833 24872159 ~ 24887679 (+) False XLOC_014074
TCONS_00028054 mRNA downstream 390519 24882845 ~ 24889227 (+) False XLOC_014074
TCONS_00028056 mRNA downstream 399421 24891747 ~ 24915520 (+) False XLOC_014075
TCONS_00028035 other upstream 577415 23913182 ~ 23913300 (+) True XLOC_014055
TCONS_00028032 other upstream 836001 23652399 ~ 23654714 (+) False XLOC_014053
TCONS_00028033 other upstream 836001 23652781 ~ 23654714 (+) False XLOC_014053
TCONS_00028034 other upstream 836001 23653700 ~ 23654714 (+) True XLOC_014053
TCONS_00028031 other upstream 849384 23637789 ~ 23641331 (+) True XLOC_014052
TCONS_00028062 other downstream 682946 25175272 ~ 25175392 (+) True XLOC_014081
TCONS_00028068 other downstream 1016467 25508793 ~ 25511562 (+) True XLOC_014083
TCONS_00028073 other downstream 1700496 26192822 ~ 26192936 (+) True XLOC_014087
TCONS_00028077 other downstream 2084268 26576594 ~ 26576708 (+) True XLOC_014090
TCONS_00028082 other downstream 2313440 26805766 ~ 26805882 (+) True XLOC_014093

Expression Profile

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